| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,556,347 – 16,556,452 |
| Length | 105 |
| Max. P | 0.862962 |
| Location | 16,556,347 – 16,556,452 |
|---|---|
| Length | 105 |
| Sequences | 11 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 61.88 |
| Shannon entropy | 0.76097 |
| G+C content | 0.59979 |
| Mean single sequence MFE | -40.89 |
| Consensus MFE | -10.56 |
| Energy contribution | -9.86 |
| Covariance contribution | -0.70 |
| Combinations/Pair | 1.69 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862962 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16556347 105 - 21146708 ---UAUCGUCGUCGCAAUCGACGCGGCGGCCGCCAAUCGGUGAAGGACGCUAGGC---------CAUCCAGCUCCCCAUCGGCUAGCACCGAGUUUGGAGCAGGAGGUGACAAGUCG ---....((((((((.......))))))))((((....))))...(((.....((---------(.(((.(((((...((((......))))....))))).)))))).....))). ( -43.00, z-score = -1.73, R) >droMoj3.scaffold_6496 25305541 103 + 26866924 -----UCGUCGUCGCAAUAAGCGUAACACGCCCUCUCACAAGUCCGGCGGCGGUG---------GAAAUGGAUCGCGUUCGGCCAGCGAUGAAUUUGGUGCCGGCGGGGAUAAGUCG -----..(((.((((.....(((.....))).............((((.(((((.---------.......))))).....(((((........))))))))))))).)))...... ( -29.80, z-score = 2.13, R) >droVir3.scaffold_12823 262022 100 + 2474545 -----ACGUCGUCGCAAUAAACGCAAUACGCCCGCCCACAAGCCGGGCGUCGGC------------AGCGGUUCACGUUCCGCUAGCGAUGAAUUCGGCGCCGGCGGGGACAAAUCA -----..(((.((((............((((((((......).)))))))((((------------(((((........)))))..(((.....)))..)))))))).)))...... ( -41.30, z-score = -1.25, R) >droWil1.scaffold_180700 4549181 115 - 6630534 --UCGCCGUCGUAGCCGUCGCACAAAUGGUGCAUCAUUGUCCAAAAGUGGAACAACUGGCGGUACUUCUAGUUCUCGUUCAGCCAGCACUGAAUUCGGAGCUGGUGGCGAUAAAUCG --((((((..(((.(((((((((.....))))....(((((((....))).))))..))))))))..((((((((.((((((......))))))..))))))))))))))....... ( -43.30, z-score = -3.41, R) >droPer1.super_4 4685751 100 + 7162766 -----UCGUCGUCGCAUUCGGGCCAACGGAGCAGCAUCAUCGAAGAAUGGAGCCA------------UGAGCUCCCGUUCUACCAGCACUGAAUUCGGUGCUGGUGGCGACAAGUCC -----..((((((((.((((......))))))...........((((((((((..------------...))).)))))))((((((((((....))))))))))))))))...... ( -44.90, z-score = -3.85, R) >dp4.chr3 11187001 100 + 19779522 -----UCGUCGUCGUAUUCGAGCCAACGGAGCAGCAUCAUCGAAGAAUGGAGCCA------------UGAGCUCCCGUUCUACCAGCACUGAAUUCGGUGCUGGUGGCGACAAGUCC -----..((((((((.((((......))))...))........((((((((((..------------...))).)))))))((((((((((....))))))))))))))))...... ( -41.40, z-score = -3.49, R) >droYak2.chr2R 8499826 103 + 21139217 -----UCGUCGCCGCAAUCGUCGCGGCGCCGGCCAGUCGGCCAAGAACGCCAUGU---------CAUCCAGUUCCCGAUCGGCUAGUGCCGAGUUUGGAGCAGGAGGUGACAAGUCG -----..(.((((((.......)))))).)((((....)))).....((.(.(((---------(((((.(((((...(((((....)))))....)))))..).))))))).).)) ( -45.40, z-score = -2.85, R) >droEre2.scaffold_4845 10704381 103 - 22589142 -----UCGUCGCCGCAAUCGACGCAAUGCCGGCCAGACAGUCAAGAACGCUAUGC---------CAUCCAGCUCCCGUUCGGCUAGUGCCGAGUUUGGAGCAGGAGGCGACAAGUCG -----..((((((((.......))......(((.((...((.....)).))..))---------).(((.(((((..((((((....))))))...))))).)))))))))...... ( -39.60, z-score = -1.97, R) >droAna3.scaffold_13266 15858159 100 + 19884421 -----CCGCCGCCGCAAUCGUCGCACUACUGGUCCGCCAACAAAGAAUG---GAG---------CGGCCAGUUCCCGUUCGGCUAGCGCCGAAUUUGGUGCCGGAGGUGAUAAAUCG -----.((((.(((........((((((((((.((((...((.....))---..)---------))))))))....(((((((....)))))))..)))))))).))))........ ( -38.60, z-score = -1.54, R) >droSim1.chr2R 15217626 108 - 19596830 AACAAUCGUCGCCGCAAUCGACGCGGCGGCCGCCAUUCGGUGAAGAACGCUAGGU---------CAGCCAGCUCCCCAUCGGAGAGUACCGAGUUUGGAGCAGGAGGUGACAAGUCG .....((((((((((.......))))))))((((....))))..)).((((..((---------((.((.(((((...((((......))))....))))).))...)))).)).)) ( -41.90, z-score = -1.82, R) >droSec1.super_1 14110231 108 - 14215200 AACAAUCGUCGCCGCAAUCGACGCGGCGGCCGCCAUUCAGUGAAGAACGCUAGGU---------CAGCCAGCUCCCCAUCGGAGAGUACCGAGUUUGGAGCAGGAGGUGACAAGUCG .......((((((((.......))))))))((((.(((((((.....)))).((.---------...)).(((((...((((......))))....))))).)))))))........ ( -40.60, z-score = -2.05, R) >consensus _____UCGUCGUCGCAAUCGACGCAACGGCGGCCCAUCAGCGAAGAACGCUAGGA_________CAUCCAGCUCCCGUUCGGCUAGCACCGAAUUUGGAGCAGGAGGUGACAAGUCG .......((((((.........(((......................)))................................((.((.(((....))).)).)).))))))...... (-10.56 = -9.86 + -0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:54 2011