| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,506,058 – 16,506,157 |
| Length | 99 |
| Max. P | 0.983395 |
| Location | 16,506,058 – 16,506,157 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 77.06 |
| Shannon entropy | 0.38348 |
| G+C content | 0.46111 |
| Mean single sequence MFE | -29.40 |
| Consensus MFE | -21.98 |
| Energy contribution | -21.82 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.13 |
| SVM RNA-class probability | 0.983395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16506058 99 + 21146708 GCUGCGAUAGAUCGAUAGGUGUUCAACGUUUGAACUUGA--------------ACAUCGUGGUAUUUUCAGGCUCUUCACCUGCGGUCUCACUGGCUGCAACAAUUAUCGAAG ....((((((((((...(((((((((.((....))))))--------------))))).))))..................(((((((.....)))))))....))))))... ( -27.30, z-score = -1.34, R) >droEre2.scaffold_4845 10652458 83 + 22589142 GCAGCGAUAUAUCGAUAGUU------UGU------------------------AUAUCGUGGUAUUUCCACCAUCUUCACCUGCGGUCUUACUGGCUGCAACAACUAUCGAAA ...........(((((((((------.((------------------------.....((((.....))))..........(((((((.....)))))))))))))))))).. ( -26.20, z-score = -3.87, R) >droYak2.chr2R 8448633 113 - 21139217 GCAGCGAUAUAUCGAUAGUUGCCAAACGUUUGAACUUGAUGUGACUGCAGGGAACAUCGCGGUAUUUCCAUCAACUUCACCUGCGGUCCGACUGGCUGCAACAACUAUCGAAA ...........((((((((((.........((((.((((((..(((((.(....)...))))).....)))))).))))..(((((((.....))))))).)))))))))).. ( -36.30, z-score = -2.78, R) >droSec1.super_1 14060069 99 + 14215200 GUUGCGAUAGAUCGAUAGUUGCUCAACGUUAGAACUUGA--------------ACAUCGUGGUAUUUCCAAGCUGUGCACCUGCGGUCUCACUGGCCGCAACAAUUAUCGAAA ...........((((((((((...............((.--------------(((.(.(((.....))).).))).))..(((((((.....))))))).)))))))))).. ( -28.10, z-score = -1.41, R) >droSim1.chr2R 15167212 99 + 19596830 GUUGCGAUAGAUCGAUAGUUGCUCAACGUUAGAACUUAA--------------GCAUCGUGGUAUUUCCAGGCUGUGCACCUGCGGUCUCACUGGCUGCAACAAUUAUCGAAA ...........((((((((((..................--------------(((((.(((.....))).)..))))...(((((((.....))))))).)))))))))).. ( -29.10, z-score = -1.33, R) >consensus GCUGCGAUAGAUCGAUAGUUGCUCAACGUUAGAACUUGA______________ACAUCGUGGUAUUUCCAGGCUCUUCACCUGCGGUCUCACUGGCUGCAACAAUUAUCGAAA ...........((((((((((.......................................((.....))............(((((((.....))))))).)))))))))).. (-21.98 = -21.82 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:50 2011