| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,505,726 – 16,505,801 |
| Length | 75 |
| Max. P | 0.903586 |
| Location | 16,505,726 – 16,505,801 |
|---|---|
| Length | 75 |
| Sequences | 6 |
| Columns | 77 |
| Reading direction | reverse |
| Mean pairwise identity | 77.09 |
| Shannon entropy | 0.43871 |
| G+C content | 0.47049 |
| Mean single sequence MFE | -20.60 |
| Consensus MFE | -12.13 |
| Energy contribution | -12.55 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.903586 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16505726 75 - 21146708 AGCUUUUUGGAGCUAUGUAAAAGCUUUACCC-CCAA-CAAAGCUCGACUCAGAGCGGAUUCCAUUCCGCGAAUAGCA .(((.(((.(((((.(((.............-...)-)).)))))........(((((......)))))))).))). ( -20.89, z-score = -2.38, R) >droSim1.chr2R 15166918 75 - 19596830 AGCUUUUUGGAGCUAUGCGAAAGCUUUCCCC-CCAA-CAAAGCUCGACUCAGAGCGGAUUCCAUUCCGCGAAUAGCA ((((((((((.(....((....)).....).-))))-.)))))).........(((((......)))))........ ( -22.00, z-score = -1.94, R) >droSec1.super_1 14059775 75 - 14215200 AGCUUUUUGGAGCUAUGCGAAAGCUUUCCCC-CCAA-CAAAGCUCGACUCAGAGCGGAUUCCAUUCCGCGAAUAGCA ((((((((((.(....((....)).....).-))))-.)))))).........(((((......)))))........ ( -22.00, z-score = -1.94, R) >droYak2.chr2R 8448284 76 + 21139217 AGCUUUUUGGAACUAUGCAAAAGCUUUUUCCAGCAG-CAAAGCUCGGCUCAGAGCGGAUUCCAUUCCGCGAAUAGCA ((((((((((((....((....))...))))))...-.))))))..(((....(((((......)))))....))). ( -22.80, z-score = -1.28, R) >droEre2.scaffold_4845 10652151 73 - 22589142 AGCUUUUUUGAGCUAUGCAAAAGCUUUCCC---CAG-UAAAGCUCGGCUCAGAGCGGAUUCCAUUCCGCGAAUAGCA .(((..((((((((..((....(((.....---.))-)...))..))))))))(((((......)))))....))). ( -24.30, z-score = -2.46, R) >droAna3.scaffold_13266 15787418 59 + 19884421 ----------------UUUGGAGCUUUUCUAACCAACCAAAGCUAGGCUUAGAGAAAAUCAAAUUCUCCGAAGAG-- ----------------(((((((.((((((((((...........)).)))))))).........)))))))...-- ( -11.60, z-score = -0.82, R) >consensus AGCUUUUUGGAGCUAUGCAAAAGCUUUCCCC_CCAA_CAAAGCUCGACUCAGAGCGGAUUCCAUUCCGCGAAUAGCA (((((....))))).(((...((((((...........)))))).........(((((......))))).....))) (-12.13 = -12.55 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:49 2011