| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,471,965 – 16,472,075 |
| Length | 110 |
| Max. P | 0.825721 |
| Location | 16,471,965 – 16,472,075 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 63.30 |
| Shannon entropy | 0.69414 |
| G+C content | 0.36778 |
| Mean single sequence MFE | -20.33 |
| Consensus MFE | -6.02 |
| Energy contribution | -6.63 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.825721 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16471965 110 + 21146708 ACUCUACAACUUUCGGGAGAGAGAAUAUUCAAAAUGGCGGCAACGCGAGGAAAUCG--AAGGAAUUCGCGAGAUACACAUUUUUUUUUAACACUUAAAUAUGUAUGUACAUA .(((.....(((((....))))).............(((....))))))(((.((.--...)).)))...(.(((((.((((.............)))).))))).)..... ( -23.22, z-score = -2.34, R) >droAna3.scaffold_13266 15752098 110 - 19884421 --GCUUAAAUGUGUGGAGAAUGAAGUACAGCAAAGUUCCACAAACCGGCAACGCCGUGAAAAAAUUUCAAGGGAAAAAGAAAACUUAGUAAACUUGGAAGUUUGUGGAAAUU --(((......(((.....)))......)))....((((((((((((((...))))........(((((((..(..(((....)))..)...)))))))))))))))))... ( -24.90, z-score = -1.69, R) >droEre2.scaffold_4845 10617133 96 + 22589142 GCUCUACAACAUUCAAGAGAGAGAAUAUUCAAAAUGGCGUCCACGCG-GGAUAUCG--AAGGAAUUCACAAGAUACACAUAUUUUU-GUACAUUUUAAAA------------ .((((..........))))...........(((((((((....))).-((((.((.--...))))))((((((.........))))-)).))))))....------------ ( -14.80, z-score = -0.97, R) >droYak2.chr2R 8414890 104 - 21139217 ACUCUACAACUUUCCGAAGAGAGAAUAUUUAAAAUGGCGUUCACGCG-GAGAAUCA--AAGGAAUUUACAAGAUACACAUAUUUUUAACACACUCAUGAACACAAAA----- .((((....(((((....))))).............(((....))))-)))..(((--..((.......((((((....)))))).......))..)))........----- ( -12.34, z-score = -0.73, R) >droSec1.super_1 14026171 105 + 14215200 ACUUUACAACUUUCGGGAGAGAGAAUAUUCAAAAUGGCGGCAACGCGCGGAAAUCG--AAGGAAUUCGCGAGAUAUACAUUUUUUU-AAACACUUAUGUACAUAUGUA---- ....((((.(((((....))))).......(((((((((....)))(((((..((.--...)).)))))........))))))...-.........))))........---- ( -25.30, z-score = -3.11, R) >droSim1.chr2R 15133257 98 + 19596830 ACUCUACAACUUUCGGGAGAGAGAAUAUUCAAAAUGGCGGCAACGCGCGGAAAACG--GAGGAAUUCGCGAGACAUACAUUUUUUUUAAACACAUAUGUA------------ ....((((.(((((....))))).......(((((((((....)))(((((.....--......)))))........)))))).............))))------------ ( -21.40, z-score = -2.41, R) >consensus ACUCUACAACUUUCGGGAGAGAGAAUAUUCAAAAUGGCGGCAACGCG_GGAAAUCG__AAGGAAUUCGCAAGAUACACAUAUUUUU_AAACACUUAUAAA__UAUG______ .........(((((....))))).............(((....))).................................................................. ( -6.02 = -6.63 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:44 2011