| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,466,324 – 16,466,417 |
| Length | 93 |
| Max. P | 0.767452 |
| Location | 16,466,324 – 16,466,417 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 89.69 |
| Shannon entropy | 0.17298 |
| G+C content | 0.52739 |
| Mean single sequence MFE | -27.04 |
| Consensus MFE | -24.74 |
| Energy contribution | -24.22 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.767452 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16466324 93 + 21146708 -ACAGGCACACUGGGUGCCAUUAAUGGGUUAAAGAGUGUUCGGUGUGGCUGAGGGACAGGACAGGUUGGUGGGACUCAGACUCAGACUUAGAUU -.........((((((.((((((((..(((......(.(((((.....))))).)....)))..)))))))).))))))............... ( -27.10, z-score = -0.80, R) >droSim1.chr2R 15127662 90 + 19596830 -ACUGGCACACUGGGUGCCAUUAAUGGGUUAA---GAGUUCGGUGUGGCUGAGGGACAGGACAGGUUGGUGGGACUCAGACUCAGACUUAGAUU -.((((....((((((.((((((((..(((..---...(((((.....)))))......)))..)))))))).))))))..))))......... ( -28.00, z-score = -1.15, R) >droSec1.super_1 14020602 90 + 14215200 -ACAGGCGCACUGGGUGCCAUUAAUGGGUUAA---GAGUUUGGUGUGGCUGAGGGACAGGACAGGUUGGUGGGACUCAGACUCAGACUUAGAUU -...(((((.....))))).....((((((..---(((((((((.(.((..(.(.......)...)..)).).)).))))))).)))))).... ( -26.20, z-score = -0.96, R) >droYak2.chr2R 8409316 87 - 21139217 CACGGGAACACUGAGUGCCAUUAAUGGGUUAA---GAGUUCGGUGUGGCUGGGGGACAGGACAGGUUGGUGGGACUCAGA----GACUUAGAUU ...(....).((((((.((((((((..(((..---.....(((.....)))(....)..)))..)))))))).)))))).----.......... ( -26.50, z-score = -2.10, R) >droEre2.scaffold_4845 10611666 84 + 22589142 -ACGGGAGCACCGAGUGCCAUUAAUGGGUUAA---GAGCUCGGUGUGGCUGAGGGACAGGACAGGUUGGUGGGACUCAG------ACUUAGAUU -..((.....))((((.((((((((..(((..---...(((((.....)))))......)))..)))))))).))))..------......... ( -27.40, z-score = -1.88, R) >consensus _ACAGGCACACUGGGUGCCAUUAAUGGGUUAA___GAGUUCGGUGUGGCUGAGGGACAGGACAGGUUGGUGGGACUCAGACUCAGACUUAGAUU ..........((((((.((((((((..(((........(((((.....)))))......)))..)))))))).))))))............... (-24.74 = -24.22 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:43 2011