| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,464,475 – 16,464,567 |
| Length | 92 |
| Max. P | 0.517833 |
| Location | 16,464,475 – 16,464,567 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 73.55 |
| Shannon entropy | 0.42110 |
| G+C content | 0.28760 |
| Mean single sequence MFE | -12.53 |
| Consensus MFE | -8.12 |
| Energy contribution | -8.38 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517833 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16464475 92 - 21146708 UUUUUUAUUUCAAUCCAAUCAAGCAUUUAAAUUUUAAUGGUUACUUACCAUUACUAC--AAUACAAAGUUGGGAGCCAGCUUUGCCAUCAAAGU ..................................(((((((.....)))))))....--....(((((((((...))))))))).......... ( -16.00, z-score = -1.96, R) >droSim1.chr2R 15125896 90 - 19596830 ---UCAAUUUUAAUCCAAUCAAGCAUUUUAAUUUUAAUGGUUACUUA-CAUAGUUACUUACUACAAAGUUGGUAGACAGCUUUGCCAUCAAAGU ---...........................(((((.((((.......-..((((.....))))((((((((.....)))))))))))).))))) ( -14.60, z-score = -1.61, R) >droSec1.super_1 14018730 90 - 14215200 ---UCAAUUUCAAUCCAAUCAAGCAUUUUAAUUUUAAUGGUUACUUA-CAUAGUUACUUACUACAAAGUUGGUAGACAGCUUUGCCAUCAAAUU ---.............................(((.((((.......-..((((.....))))((((((((.....)))))))))))).))).. ( -13.10, z-score = -1.53, R) >droEre2.scaffold_4845 10608583 82 - 22589142 --UUGAAUAUUUUUUUCCUGUAAAAUUUGA--UUUAAUCUUUUCU---AACAAUUAC----UACAAAGUUGGCA-CCAUCUUUGCACUUAAAGC --((((((...((((......))))....)--)))))........---.........----..(((((.((...-.)).))))).......... ( -6.40, z-score = 0.66, R) >consensus ___UCAAUUUCAAUCCAAUCAAGCAUUUUAAUUUUAAUGGUUACUUA_CAUAAUUAC__ACUACAAAGUUGGUAGACAGCUUUGCCAUCAAAGU ...............................................................((((((((.....)))))))).......... ( -8.12 = -8.38 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:42 2011