| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,461,564 – 16,461,663 |
| Length | 99 |
| Max. P | 0.530011 |
| Location | 16,461,564 – 16,461,663 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 83.04 |
| Shannon entropy | 0.28065 |
| G+C content | 0.37430 |
| Mean single sequence MFE | -27.03 |
| Consensus MFE | -16.34 |
| Energy contribution | -16.18 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.530011 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16461564 99 + 21146708 ------UAUAUUGCAAUCGUGCAAAUAAAUGC---------AC-----AUAGUAUUUUUGCAUGUCUAAUGGAUUUACGGCACAUUAAGCUAACAUUUUCAUGGCGUGCAACUUUCCCA ------.....(((.((.(((((......)))---------))-----)).)))...(((((((((..(((((.....(((.......)))......))))))))))))))........ ( -22.30, z-score = -1.14, R) >droSim1.chr2R 15123012 99 + 19596830 ------UAUAUUGCAAUCGUGCAAAUAAGUGC---------AC-----AUAGUACUUUUGCAUGUCUAAUGGAUUUACGGCACAUUAGGCUAACAUUUCCAUGGCGUGCAACUUUCCCA ------....(((((....)))))..((((((---------..-----...))))))(((((((((..(((((.....(((.......)))......))))))))))))))........ ( -26.50, z-score = -1.88, R) >droSec1.super_1 14015866 99 + 14215200 ------UAUAUUGCAAUCGUGCAAAUAAAUGC---------AC-----AUAGCACUUUUGCAUGUCUAAUGGAUUUACGGCACAUUAGGCUAACAUUUCCAUGACGUGCAACUUUCCCA ------.....(((.((.(((((......)))---------))-----)).)))...(((((((((..(((((.....(((.......)))......))))))))))))))........ ( -27.60, z-score = -3.13, R) >droYak2.chr2R 8404559 114 - 21139217 UAUACAUUUAAUGCAAUCGUGCAAAUAAAUGCUGGAAGUGCAC-----ACAGUACUUUUGCAUGUCUAAUGGAUUUACGGCACAUUAAGUUAACAUUUUUAUGCCGUGCAACUUUCCCA ....((((((.((((....))))..))))))..((((((((((-----...(((....(.(((.....))).)..)))((((...((((........)))))))))))).))))))... ( -24.40, z-score = -0.48, R) >droEre2.scaffold_4845 10605676 113 + 22589142 ------UAUAUUGCAAUCGUGCAAUUAAAUGCUGCAGCAUUACUUGCAGCAGUACUUUUGCAUAUCUAAUGGAUUUACGGCACAUUAAGUUAACAAUUUUGUGCCGUGCAACCUUCCCA ------....((((....((((((.....((((((((......))))))))......)))))).............((((((((...............))))))))))))........ ( -34.36, z-score = -3.38, R) >consensus ______UAUAUUGCAAUCGUGCAAAUAAAUGC_________AC_____AUAGUACUUUUGCAUGUCUAAUGGAUUUACGGCACAUUAAGCUAACAUUUUCAUGCCGUGCAACUUUCCCA ..........(((((....))))).................................(((((((((..(((((.....(((.......)))......))))))))))))))........ (-16.34 = -16.18 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:41 2011