| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,418,152 – 16,418,249 |
| Length | 97 |
| Max. P | 0.543355 |
| Location | 16,418,152 – 16,418,249 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 63.86 |
| Shannon entropy | 0.65269 |
| G+C content | 0.29948 |
| Mean single sequence MFE | -18.93 |
| Consensus MFE | -7.24 |
| Energy contribution | -7.51 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.58 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.543355 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16418152 97 - 21146708 ---------------CAAUAAACUAAUAAAUUAGUUU--CUAAUUUGAUGGAAGCCAAUAAUAGUUU--GCU-GUUUAUCAGAGAUUUAGGCGGCUUAGAUUAAGUAGUGAAGACGU ---------------....(((((((....)))))))--...(((((((..(((((......(((((--.((-(.....)))))))).....)))))..)))))))........... ( -17.70, z-score = -0.63, R) >droAna3.scaffold_13266 17021745 80 + 19884421 ---------------CAAUAAACUAAUAAAUUAAUUAGCAUCUUUCAUUGAAGAGUGAUUUUGGCCUUAGCC--ACUUCUAAUAAGCUGGUGAAAAU-------------------- ---------------..................((((((.(((((....)))))..((...((((....)))--)..))......))))))......-------------------- ( -12.70, z-score = -0.43, R) >droEre2.scaffold_4845 10563138 97 - 22589142 ---------------CAAUAAACUAAUAAAUUAGUUU--CUAAUUUGAUGGAAGCUAGUAAUAGUUU--GCU-GUUUAUUGGAGAUUUAGGCGGCUUAGAUUAAGUAGUGAAGACGU ---------------......((((....((((((((--(((......)))))))))))..((((((--(((-(((((.........))))))))..))))))..))))........ ( -21.30, z-score = -1.80, R) >droYak2.chr2R 8360825 97 + 21139217 ---------------CAAUAAACUAAUAAAUUAGUUU--CUAAUUUGAUGGUAGCCAAUAAUAGAUU--GCU-GUUUAUCAGAGAUUUAGGCGGCUUAGAUUAAGUAGUGCAGACAU ---------------....(((((((....)))))))--...(((((((...((((.....(((((.--.((-(.....)))..)))))...))))...)))))))........... ( -17.50, z-score = -0.31, R) >droSec1.super_1 13973702 97 - 14215200 ---------------CAAUAAACUAAUAAAUUAGUUU--CUAAUUUGAUGGAAGCCAAUAAUAGAUU--GCU-GUUUAUCAGAGAUUUAGGCGGCUUAGAUUAAGUAGUGAAGACGU ---------------....(((((((....)))))))--...(((((((..(((((.....(((((.--.((-(.....)))..)))))...)))))..)))))))........... ( -20.00, z-score = -1.63, R) >droSim1.chr2R 15077116 97 - 19596830 ---------------CAAUAAACUAAUAAAUUAGUUU--CUAAUUUGAUGGAAGCCAAUAAUAGUUU--GCU-GUUUAUCAGAGAUUUAGGCGGCUUAGAUUAAGUAGUGAAGACGU ---------------....(((((((....)))))))--...(((((((..(((((......(((((--.((-(.....)))))))).....)))))..)))))))........... ( -17.70, z-score = -0.63, R) >droWil1.scaffold_180697 300394 116 + 4168966 CAAUAUUGGACACGAUGUUUGACUGGAUAUUUAGUUAA-AUAUUUUAUCAAAUAUCUAAAUUAAAUCUAGUUAGAUUUUUGACUGAAAAUUCGACUUGAUUUUAGGACUAGAUAGAU .....((((....(((((((((..((((((((....))-))))))..)))))))))......(((((.(((..(((((((....)))))))..))).))))).....))))...... ( -25.60, z-score = -3.02, R) >consensus _______________CAAUAAACUAAUAAAUUAGUUU__CUAAUUUGAUGGAAGCCAAUAAUAGAUU__GCU_GUUUAUCAGAGAUUUAGGCGGCUUAGAUUAAGUAGUGAAGACGU ...................(((((((....))))))).....(((((((..(((((......((......)).(((((.........))))))))))..)))))))........... ( -7.24 = -7.51 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:34 2011