| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,431,619 – 3,431,737 |
| Length | 118 |
| Max. P | 0.714066 |
| Location | 3,431,619 – 3,431,737 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.13 |
| Shannon entropy | 0.06639 |
| G+C content | 0.42234 |
| Mean single sequence MFE | -34.44 |
| Consensus MFE | -28.60 |
| Energy contribution | -29.60 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.714066 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3431619 118 + 23011544 AUUUCAUAUGCAAAAUGCGAAUUUUCGGUGGCCAGGA-CGAAAAUGAAAUUU-GGCCAUCGCAUUGAUGGUUGGCCAAAAGGCCGGCCUCAAACCAAUUUAUCACGAACGCAAUUAACUA ...............((((......(((((((((((.-...........)))-))))))))..((((.((((((((....))))))))))))................))))........ ( -37.60, z-score = -2.86, R) >droEre2.scaffold_4929 3461162 118 + 26641161 AUUUCAUAUGCAAAAUACGAAUUUUCGGUGGCCAGGA-CCGAAAUGAAAUUU-GGCCAUCGCAUUGAUGGGUGGCCAAGAGGACGGGCUCAAACCAAUUUAUCACGAACGCAAUUAACUA ........(((...........(((((((.......)-))))))(((..(((-(((((((.((....)))))))))))).....((.......))......))).....)))........ ( -28.80, z-score = -0.56, R) >droYak2.chr2L 3418204 120 + 22324452 AUUUCAUAUGCAAAAUACGAAUUUUCGGUGGCCAGGAACGAAAAUGAAAUUUUGGCCAUCGCAUUGAUGGUUGGCCAAAAGGCCGGCCUCAAACCAAUUUAUCACGAACGCAAUUAACUA ........(((..............((((((((((((............))))))))))))..((((.((((((((....)))))))))))).................)))........ ( -37.40, z-score = -3.28, R) >droSec1.super_5 1578170 118 + 5866729 AUUUCAUAUGCAAAAUGCGAAUUUUCGGUGGCCAGGA-CCAAAAUGAAAUUU-GGCCAACGCAUUGAUGGUUGGCCAAAAGGCCGGCCUCAAACCAAUUUAUCACGAACGCAAUUAACUA ...............((((....((((.((((((((.-.(.....)...)))-))))).....((((.((((((((....))))))))))))............))))))))........ ( -34.20, z-score = -1.91, R) >droSim1.chr2L 3369697 118 + 22036055 AUUUCAUAUGCAAAAUGCGAAUUUUCGGUGGCCAGGA-CCAAAAUGAAAUUU-GGCCAACGCAUUGAUGGUUGGCCAAAAGGCCGGCCUCAAACCAAUUUAUCACGAACGCAAUUAACUA ...............((((....((((.((((((((.-.(.....)...)))-))))).....((((.((((((((....))))))))))))............))))))))........ ( -34.20, z-score = -1.91, R) >consensus AUUUCAUAUGCAAAAUGCGAAUUUUCGGUGGCCAGGA_CCAAAAUGAAAUUU_GGCCAUCGCAUUGAUGGUUGGCCAAAAGGCCGGCCUCAAACCAAUUUAUCACGAACGCAAUUAACUA ........(((..............((((((((.(((............))).))))))))..((((.((((((((....)))))))))))).................)))........ (-28.60 = -29.60 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:52 2011