| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,413,076 – 16,413,131 |
| Length | 55 |
| Max. P | 0.910644 |
| Location | 16,413,076 – 16,413,131 |
|---|---|
| Length | 55 |
| Sequences | 6 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 87.01 |
| Shannon entropy | 0.24100 |
| G+C content | 0.44107 |
| Mean single sequence MFE | -12.18 |
| Consensus MFE | -10.72 |
| Energy contribution | -10.92 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.910644 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16413076 55 + 21146708 AUAACAUACUUGCAGCCCAAAAGUAAAACAGGACUGGCAACAAUGCCGCAGGAUU ........(((((((.((............)).))((((....)))))))))... ( -12.70, z-score = -1.65, R) >droSim1.chr2R 15072172 55 + 19596830 AUAACAUACUUGCAGCCCAAAAGUAAAACAGGACUGGCAACAAUGCCGCAGGAUU ........(((((((.((............)).))((((....)))))))))... ( -12.70, z-score = -1.65, R) >droSec1.super_1 13968734 55 + 14215200 AUAACAUACUUGCAGCCCAAAAGUAAAACAGGACUGGCAACAAUGCCGCAGGAUU ........(((((((.((............)).))((((....)))))))))... ( -12.70, z-score = -1.65, R) >droYak2.chr2R 8355493 50 - 21139217 ----CAUACUUGCAGCC-GAAAGUAAAACAGGACUGGCAACAAUGCCGCAGGAUU ----....(((((((((-............)).))((((....)))))))))... ( -13.40, z-score = -2.13, R) >droEre2.scaffold_4845 10558189 50 + 22589142 ----CAUACUUGCAACC-GAAAGUAAGAGAGGACUGGCAACAAUGCCGCAGGAUU ----....(((((...(-....)............((((....)))))))))... ( -12.90, z-score = -2.50, R) >droAna3.scaffold_13266 17017061 53 - 19884421 -GUAUGUACUUUCAGCU-AAAAGUAAAACUGGACUGGCAACAAUGCCACAAGAUU -((...((((((.....-.))))))..)).....(((((....)))))....... ( -8.70, z-score = -0.50, R) >consensus _UAACAUACUUGCAGCC_AAAAGUAAAACAGGACUGGCAACAAUGCCGCAGGAUU ........(((((........(((........)))((((....)))))))))... (-10.72 = -10.92 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:33 2011