| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,341,894 – 16,341,987 |
| Length | 93 |
| Max. P | 0.629901 |
| Location | 16,341,894 – 16,341,987 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 91.01 |
| Shannon entropy | 0.15317 |
| G+C content | 0.45263 |
| Mean single sequence MFE | -27.23 |
| Consensus MFE | -20.07 |
| Energy contribution | -20.87 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.629901 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16341894 93 + 21146708 CAUUUACUGCAUUUUUAUGUGACCAGGGGCGAAUUGGGCCAGGCAUAUGUACAUAUGUAGAUAGGGCCUGGUCAUUGAUGGGUUAUGUAAUAG ..............((((((((((.....(((....((((((((.(((.(((....))).)))..)))))))).)))...))))))))))... ( -31.00, z-score = -2.65, R) >droSim1.chr2R 14998822 89 + 19596830 CAUUUACUGCAUUUUUAUGUGACCAGGGUCGGAUUGGGCCAGGCAUAUGUA----UGUAGAUAGGGCCUGGUCAUUGAUGGGUUAUGUAAGAG ............((((((((((((...(((((....((((((((...(((.----.....)))..)))))))).))))).)))))))))))). ( -30.40, z-score = -2.91, R) >droSec1.super_1 13898605 89 + 14215200 CAUUUACUGCAUUUUUAUGUGACCAGGGUCGGAUUGGGCCAGGCAUAUGUA----UGUAGAUAGGGCCUGGUCAUUGAUGGGUUAUGUAAGAG ............((((((((((((...(((((....((((((((...(((.----.....)))..)))))))).))))).)))))))))))). ( -30.40, z-score = -2.91, R) >droYak2.chr2R 8282880 83 - 21139217 CAUUUACUGCAUUUUUAUGUGACCAGGG-CGGAUUGGGGCAGGCAUAUGUA--------GAU-GGGCCAGGUCAUUGAUGGGUUAUGUAAGAG ............((((((((((((....-..((((..(((...(((.....--------.))-).))).)))).......)))))))))))). ( -20.42, z-score = -0.69, R) >droEre2.scaffold_4845 10487904 84 + 22589142 CAUUUACUGCAUUUUUAUGUGACCAGGGGCGGAUUGGGACCGGCAUAUGUA--------GAU-UGGCCUGGUCAUUGAUGGGUUAUGUAAGAG ............((((((((((((.......(((..((.(((((.......--------).)-)))))..))).......)))))))))))). ( -23.94, z-score = -1.41, R) >consensus CAUUUACUGCAUUUUUAUGUGACCAGGGGCGGAUUGGGCCAGGCAUAUGUA____UGUAGAUAGGGCCUGGUCAUUGAUGGGUUAUGUAAGAG ............((((((((((((.......(((..((((..((....))..............))))..))).......)))))))))))). (-20.07 = -20.87 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:28 2011