| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,334,278 – 16,334,395 |
| Length | 117 |
| Max. P | 0.822648 |
| Location | 16,334,278 – 16,334,395 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 71.30 |
| Shannon entropy | 0.53947 |
| G+C content | 0.38633 |
| Mean single sequence MFE | -25.31 |
| Consensus MFE | -13.10 |
| Energy contribution | -13.71 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.822648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16334278 117 - 21146708 AUUAUAUUCAUAUGUUUGCUGUGUGUGCAUGCGUAAAAUAAAUCAAAAAAUGAAUGACCUUUUCUGACCCAGUCGAUAUUCGAUUGUCCACAACAGGGUCUCAUGAA--UCGUGAAUCU .((((((((.(((((.(((.......))).)))))..............((((..((((((........((((((.....))))))........)))))))))))))--).)))).... ( -25.19, z-score = -1.13, R) >droSim1.chr2R 14990963 119 - 19596830 GUUAUAUUCAUAUGUUUGCCGUGUGUGCAUGCGUAAAAUAAAUCAAAAGAUGAAUGACCUUUUCUGACACAGUCGAUAUUCGAUUGUCCACAACAGGGUCUCAUGAAUCUCGUGAAUCU .....((((((...(((((((((....)))).)))))............))))))((((((.......(((((((.....))))))).......))))))(((((.....))))).... ( -28.50, z-score = -1.29, R) >droSec1.super_1 13890971 113 - 14215200 ------UUCAUAUGUUUGCUGUGUGUGCAUGCGUAAAAUAAAUCAAAAGAUGAAUGACCUUUUCUGACCCAGUCGAUAUUCGAUUGUCCACAACAGGGUCUCAUGAAUCUCGUGAAUCU ------....(((((.(((.......))).))))).......(((..((((..((((........((((((((((.....)))))((.....)).)))))))))..))))..))).... ( -27.20, z-score = -1.53, R) >droYak2.chr2R 8274899 112 + 21139217 -----AUUCAUAUGUUUGCCGUGUGUGCAUGCACCAAAUAAAUCAAAAGAUGAAUGACCUUCUGUGACCCAGUCAAUAUUCCACUGUCCCAAACAGAGGCUCAUGAA--UCGUGAAUAU -----((((((.((((((..((((......))))))))))........(((..((((.(((((((....((((.........))))......))))))).))))..)--)))))))).. ( -27.90, z-score = -2.48, R) >droEre2.scaffold_4845 10480332 112 - 22589142 -----AUUCAUAUGUUUGCCGUGUGUGCAUGCGCAAAAUAAAUCAAAAGAUGAAUGACCUUCACUGACCCAGUCGACAUUCGAUUGUCCAAAACAGGGUCUCAUGAA--UCGGGAAAAU -----((((((...(((((((((....)))).)))))............))))))..((((((..((((((((((.....)))))((.....)).)))))...))).--..)))..... ( -26.76, z-score = -0.72, R) >droGri2.scaffold_15245 16089390 95 + 18325388 ---AUUUCAGAACAUUUUUUUUCAAUACA---GUCAAUUAAA-CAGAAUAUUCAGCUUUUCGCCUGGCCAGGCCACUUGACAGCCGGUCAAAAAAGCAGUUU----------------- ---......(((.(((((.(((.(((...---....))))))-.))))).))).((((((....(((((.(((.........)))))))).)))))).....----------------- ( -16.30, z-score = -1.05, R) >consensus _____AUUCAUAUGUUUGCCGUGUGUGCAUGCGUAAAAUAAAUCAAAAGAUGAAUGACCUUUUCUGACCCAGUCGAUAUUCGAUUGUCCAAAACAGGGUCUCAUGAA__UCGUGAAUCU .....((((((...((((...(((..((....))...)))...))))..))))))((((((........((((((.....))))))........))))))(((((.....))))).... (-13.10 = -13.71 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:26 2011