| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,419,751 – 3,419,805 |
| Length | 54 |
| Max. P | 0.916930 |
| Location | 3,419,751 – 3,419,805 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 97.53 |
| Shannon entropy | 0.03401 |
| G+C content | 0.55556 |
| Mean single sequence MFE | -21.13 |
| Consensus MFE | -19.37 |
| Energy contribution | -19.70 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.916930 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3419751 54 + 23011544 UGGCUGGAACUCCGCUUUUGACCACGUCGAUGGUCAUGCUGGUCAUGUUGGCCA .(((..(....((((...((((((......)))))).)).)).....)..))). ( -20.20, z-score = -2.03, R) >droSec1.super_5 1566296 54 + 5866729 UGGCUGGAACUCCGCUUUUGACCACGUCGAUGGUCAUGGUGGUCAUGAUGGCCA .(((((.....(((((..((((((......)))))).)))))......))))). ( -21.60, z-score = -2.18, R) >droSim1.chr2L 3357961 54 + 22036055 UGGCUGGAACUCCGCUUUUGACCACGUCGAUGGUCAUGGUGGUCAUGAUGGCCA .(((((.....(((((..((((((......)))))).)))))......))))). ( -21.60, z-score = -2.18, R) >consensus UGGCUGGAACUCCGCUUUUGACCACGUCGAUGGUCAUGGUGGUCAUGAUGGCCA .(((((.....(((((..((((((......)))))).)))))......))))). (-19.37 = -19.70 + 0.33)
| Location | 3,419,751 – 3,419,805 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 97.53 |
| Shannon entropy | 0.03401 |
| G+C content | 0.55556 |
| Mean single sequence MFE | -16.57 |
| Consensus MFE | -15.33 |
| Energy contribution | -15.67 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.764512 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3419751 54 - 23011544 UGGCCAACAUGACCAGCAUGACCAUCGACGUGGUCAAAAGCGGAGUUCCAGCCA .(((...........((.(((((((....)))))))...))((....)).))). ( -16.50, z-score = -1.63, R) >droSec1.super_5 1566296 54 - 5866729 UGGCCAUCAUGACCACCAUGACCAUCGACGUGGUCAAAAGCGGAGUUCCAGCCA .(((.....(((((((..((.....))..))))))).....((....)).))). ( -16.60, z-score = -1.66, R) >droSim1.chr2L 3357961 54 - 22036055 UGGCCAUCAUGACCACCAUGACCAUCGACGUGGUCAAAAGCGGAGUUCCAGCCA .(((.....(((((((..((.....))..))))))).....((....)).))). ( -16.60, z-score = -1.66, R) >consensus UGGCCAUCAUGACCACCAUGACCAUCGACGUGGUCAAAAGCGGAGUUCCAGCCA .(((.....(((((((..((.....))..))))))).....((....)).))). (-15.33 = -15.67 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:51 2011