| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,314,778 – 16,314,841 |
| Length | 63 |
| Max. P | 0.621378 |
| Location | 16,314,778 – 16,314,841 |
|---|---|
| Length | 63 |
| Sequences | 7 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 71.06 |
| Shannon entropy | 0.56224 |
| G+C content | 0.37956 |
| Mean single sequence MFE | -14.06 |
| Consensus MFE | -7.77 |
| Energy contribution | -7.27 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.76 |
| Mean z-score | -0.87 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.621378 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16314778 63 - 21146708 UUAGCCAGAUCCUUGCCAAACUUUUGC------CAAAUCAGUUUAGUGAAUGGGUUAUGCAAGGAUAAA ........((((((((..((((((..(------.(((....))).)..))..))))..))))))))... ( -15.10, z-score = -1.37, R) >droSim1.chr2R 14971099 63 - 19596830 UUAGCCAGGUCCUUGCCAAACUUUUGC------CAAAUCAGUUUAGUGAAUGGGUUAUGCAAGGAUAAA ........((((((((..((((((..(------.(((....))).)..))..))))..))))))))... ( -15.40, z-score = -0.92, R) >droSec1.super_1 13871068 63 - 14215200 UUAGCCAGGUCCUUGCCAAACUUUUGC------CAAAUCAGUUUAGUGAAUGGGUUAUGCAAGGAUAAA ........((((((((..((((((..(------.(((....))).)..))..))))..))))))))... ( -15.40, z-score = -0.92, R) >droYak2.chr2R 8253354 69 + 21139217 UUAGCCAGGUCCUUGGCAAACUUUUGCCAAAUCCAAAUCAGUUUAGUGAAUGGGUUAUGCAAGGAUAAA ........(((((((((((....))))).((((((..(((......))).))))))....))))))... ( -17.80, z-score = -1.31, R) >droEre2.scaffold_4845 10460066 62 - 22589142 UUAGCCACGUCCUUGCCAAACUUUUGC-------AAAUCAGUUUAGUGAAUGGGUUAUGCAAGGAUAAA ........((((((((..((((((..(-------.((.....)).)..))..))))..))))))))... ( -14.90, z-score = -1.36, R) >droAna3.scaffold_13266 16908708 63 + 19884421 UUGCUCAGGACCUGAUCGAAAGUUUCG------CAAAUCAGUUUGCUGAAUGGGUUAUGCAAGGAUAAC ((((....(((((((.(....)..))(------((((....))))).....)))))..))))....... ( -15.00, z-score = -1.05, R) >droGri2.scaffold_15245 16063511 69 + 18325388 CAACUGAAAAUAUUGUUAUGAAACUGUGAAAUCAGAAUCGAAGAAACACAAAUUUGCUAUUAGCUUAAA ...((((...(((.(((....))).)))...))))....................((.....))..... ( -4.80, z-score = 0.84, R) >consensus UUAGCCAGGUCCUUGCCAAACUUUUGC______CAAAUCAGUUUAGUGAAUGGGUUAUGCAAGGAUAAA ........((((((((..(((((((((..................)))))..))))..))))))))... ( -7.77 = -7.27 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:22 2011