| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,297,975 – 16,298,088 |
| Length | 113 |
| Max. P | 0.913942 |
| Location | 16,297,975 – 16,298,088 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 78.99 |
| Shannon entropy | 0.36753 |
| G+C content | 0.50370 |
| Mean single sequence MFE | -16.48 |
| Consensus MFE | -13.88 |
| Energy contribution | -13.64 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913942 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16297975 113 - 21146708 CCUGCUCCUACCCUUACCCCUUCCCCUGAUCCCGAUUACGAUUACGAUUCAGAUCCCACAUGCCUAUAUUUCCGGCACCACCUGCAAGUUGGAAUACAAUCCGCAGACAAUUG ...........................((((..((((........))))..)))).....((((.........))))....((((..((((.....))))..))))....... ( -15.60, z-score = -0.98, R) >droSim1.chr2R 14953377 113 - 19596830 CCUACCCCUUCCCGAACUCACUCCCCUGAUCCCGAUUACGAUUACGAUUCAGAUCCCACCUGCCUAUAUUUCCGGCACCACCUGCAAGUUGGAAUACAAUCCGCAGACAAUUG ...........................((((..((((........))))..)))).....((((.........))))....((((..((((.....))))..))))....... ( -15.40, z-score = -0.98, R) >droSec1.super_1 13854602 113 - 14215200 CCUACCCCUUCCCGAACUCACUCCCCUGAUCCCGAUUACGAUUACGAUUCAGAUCCCACCUGCCUAUAUUUCCGGCACCACCUGCAAGUUGGAAUACAAUCCGCAGACAAUUG ...........................((((..((((........))))..)))).....((((.........))))....((((..((((.....))))..))))....... ( -15.40, z-score = -0.98, R) >droYak2.chr2R 8235855 97 + 21139217 ----------------CCCAUUCCCCAUCCACUGAUCCCGAUUACGAUUCAGAUCCAACCUGCCUAUAUUUCCGGCACCACCUGCAAGUUGGCAUACAAUCCGCAGACAAUUG ----------------...............((((...((....))..))))........((((.........))))....((((..((((.....))))..))))....... ( -16.00, z-score = -1.53, R) >droEre2.scaffold_4845 10443212 85 - 22589142 ----------------------------CUUCUGAUCCCGAUUACGAUUCAGAUCCCAACUGCCUAUAUAUCCGGCAGCACCUGCAAGUUGGAACACAAUCCGCAGACAAUUG ----------------------------..(((((...((....))..)))))......(((((.........)))))...((((..((((.....))))..))))....... ( -20.00, z-score = -2.60, R) >consensus CCU_C_CCU_CCC__ACCCACUCCCCUGAUCCCGAUUACGAUUACGAUUCAGAUCCCACCUGCCUAUAUUUCCGGCACCACCUGCAAGUUGGAAUACAAUCCGCAGACAAUUG .................................((((..((.......)).)))).....((((.........))))....((((..((((.....))))..))))....... (-13.88 = -13.64 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:20 2011