| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,296,092 – 16,296,153 |
| Length | 61 |
| Max. P | 0.740948 |
| Location | 16,296,092 – 16,296,153 |
|---|---|
| Length | 61 |
| Sequences | 6 |
| Columns | 68 |
| Reading direction | forward |
| Mean pairwise identity | 79.61 |
| Shannon entropy | 0.37415 |
| G+C content | 0.54889 |
| Mean single sequence MFE | -17.48 |
| Consensus MFE | -11.68 |
| Energy contribution | -11.10 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740948 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16296092 61 + 21146708 CUUCGGGCUGCAGGAUUCUGUUUUCGGAGUCCUGACUCCACA---CCACAC----UCCAUCACAACAA ....(((...((((((((((....))))))))))..)))...---......----............. ( -18.60, z-score = -3.02, R) >droAna3.scaffold_13266 16888572 68 - 19884421 CUUCUAGCUGACGGAUCCCGAGAUGGGAGCUAGGACCUGGGGAGCCUGCAACAGCUCCAUCACAACAA .(((((((.......((((.....)))))))))))..((((((((........))))).)))...... ( -19.81, z-score = -0.19, R) >droEre2.scaffold_4845 10441348 61 + 22589142 CCUGGGGCUGCAGGAUCCUGUUUUCGGAGUCCUGACUCCACA---CCACAC----UCCAUCACAACAA ..(((((...(((((..(((....)))..))))).)))))..---......----............. ( -17.40, z-score = -1.24, R) >droYak2.chr2R 8233943 65 - 21139217 CUUGGGGCAACAGGAUCCUGUUUUCGGAGUCCUGACUCCACA---CCACACACACUCCAUCACAACAA ..(((((.(((((....)))))...(((((....)))))...---.........)))))......... ( -17.70, z-score = -2.15, R) >droSec1.super_1 13852750 61 + 14215200 CUUCGGGCUGCAGGAUCCUGUUUUCGGAGUCCUGUCUCCACA---CCGCAC----UCCAUCACAACAA .....((..((((((..(((....)))..))))))..))...---......----............. ( -15.80, z-score = -1.32, R) >droSim1.chr2R 14951550 61 + 19596830 CUUCGGGCUGCAGGAUCCUGUUUUCGGAGUCCUGACUCCACA---CCGCAC----UCCAUCACAACAA ....((..(((((....))......(((((....)))))...---..))).----.)).......... ( -15.60, z-score = -1.23, R) >consensus CUUCGGGCUGCAGGAUCCUGUUUUCGGAGUCCUGACUCCACA___CCACAC____UCCAUCACAACAA ....(((...((((((.(((....))).))))))..)))............................. (-11.68 = -11.10 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:19 2011