| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,295,157 – 16,295,273 |
| Length | 116 |
| Max. P | 0.715686 |
| Location | 16,295,157 – 16,295,273 |
|---|---|
| Length | 116 |
| Sequences | 11 |
| Columns | 146 |
| Reading direction | forward |
| Mean pairwise identity | 70.23 |
| Shannon entropy | 0.54405 |
| G+C content | 0.48134 |
| Mean single sequence MFE | -39.52 |
| Consensus MFE | -13.87 |
| Energy contribution | -14.09 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.715686 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16295157 116 + 21146708 UAGAUGAUUGUGCCGUCAGCGG-------------------ACAAAAGUGGC-CA-GGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCCUUUGCGCUU--CCGUUUCUUGCAGCACGUCCAAGAA------- ....((..(((((.((.((.((-------------------.((....)).)-).-(((((((((((.((((.(((((((........))))))).))..)).)))))))))--))....)).)).)))))..))....------- ( -39.50, z-score = -1.95, R) >droSim1.chr2R 14950647 116 + 19596830 UAGAUGAUUGUGCCGUCAGCGG-------------------GCAAAAGUGGC-CA-GGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCCUUUGCGCUU--CCGUUUCUUGCAGCACGUCCAAGAA------- ....((..(((((.((.((.((-------------------.((....)).)-).-(((((((((((.((((.(((((((........))))))).))..)).)))))))))--))....)).)).)))))..))....------- ( -42.00, z-score = -2.24, R) >droSec1.super_1 13851835 116 + 14215200 UAGAUGAUUGUGCCGUCAGCGG-------------------GCAAAAGUGGC-CA-GGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCCUUUGCGCUU--CCGUUUCUUGCAGCACGUCCAAGAA------- ....((..(((((.((.((.((-------------------.((....)).)-).-(((((((((((.((((.(((((((........))))))).))..)).)))))))))--))....)).)).)))))..))....------- ( -42.00, z-score = -2.24, R) >droYak2.chr2R 8232995 120 - 21139217 ---UAGAUGAUGGUGUCAGCAG-------------------GCAAAAGUGGC-CA-GGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCCUUUGCGCUU--CCGUUUCUUGCAGCACGCAGCACGUCCAAGAA ---..((((.((((((..((((-------------------((.......))-).-(((((((((((.((((.(((((((........))))))).))..)).)))))))))--))......))).)))).))...))))...... ( -43.20, z-score = -1.79, R) >droEre2.scaffold_4845 10440418 116 + 22589142 UAGAUGAUGGUGGUGUCAGCAG-------------------GCAAAAGUGGC-CA-GGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCCUUUGCGCUU--CCGUUUCUUGCAGCACG-------UCCAAGAA .......(((..((((..((((-------------------((.......))-).-(((((((((((.((((.(((((((........))))))).))..)).)))))))))--))......))).)))).-------.))).... ( -42.60, z-score = -2.32, R) >droAna3.scaffold_13266 16887608 116 - 19884421 UAGAUGAUGGUGCUGUCAGCGG-------------------GCAAAAGUGGU-CA-GGAAGUGCAAGUGCCAACGGAAAGUUUUAAUUGUUUCUGCUUUUGCCUUUCAGCUU--CCGUUUCUUGCUGCAUGGCCAAGAA------- .....(((((.((((.....((-------------------(((((((..(.-((-(...(.((....)))(((.....)))....)))...)..)))))))))..))))..--)))))(((((((....)).))))).------- ( -32.80, z-score = 0.38, R) >dp4.chr3 10357769 103 + 19779522 ---------AAGUGGUCGCCUG--------------------UCUGUGUGGCACACGGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGCUGUUUCCGUCUCUUGCUGCUGCACGAACAAAGA-------------- ---------...........((--------------------(.((((..(((.((....))(((((.(...((((((((....................))))))))).))))))))..)))).)))....-------------- ( -31.75, z-score = -0.87, R) >droPer1.super_4 5691744 103 + 7162766 ---------AAGUGGUCGCCUG--------------------UCUGUGUGGCACACGGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGCUGUUUCCGUCUCUUGCUGCUGCACGAACAAAGA-------------- ---------...........((--------------------(.((((..(((.((....))(((((.(...((((((((....................))))))))).))))))))..)))).)))....-------------- ( -31.75, z-score = -0.87, R) >droWil1.scaffold_180697 4109751 108 + 4168966 UAGAUGAUUAUGUU-CUGUCAG-------------------GCAAAAGUGGC-CA-GGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCUUUCACAUUU--CCGUU-CCAGCGGGAAGAA------------- ....((((......-..))))(-------------------((.......))-).-....(((.((((..((.(((((((........))))))).))..)))).))).(((--((((.-...)))))))...------------- ( -30.80, z-score = -1.09, R) >droVir3.scaffold_12875 11685083 121 - 20611582 UAGCUGAUUGUGCCGUCAUGGGUGGCUUGAAGCUGCGCGUGGCCAAAAUGGU-CA-GGAAGUGCAAGUGGCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCUUUUGCGCUU--CCGUUUCUUGG--------------------- ....((((..(...((((((.(..((.....))..).))))))....)..))-))-(((((((((((..(((.(((((((........))))))).)))..))..)))))))--)).........--------------------- ( -53.00, z-score = -4.88, R) >droMoj3.scaffold_6496 18257403 109 + 26866924 UAGCUGAUUUUGCCGUCAUGGCUAGCUUG------------GCCAAAAUGGU-CA-GGAAGUGCAAGUGGCAACGGAAACUUUUAAUUGUUUCUGCCGUUGCUUUUGCGCUU--CCGUUUCAUGC--------------------- ..(((((....(((((..(((((.....)------------))))..)))))-..-(((((((((((.((((((((((((........))))...)))))))))))))))))--))...))).))--------------------- ( -45.30, z-score = -4.58, R) >consensus UAGAUGAUUGUGCCGUCAGCGG___________________GCAAAAGUGGC_CA_GGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCCUUUGCGCUU__CCGUUUCUUGCAGCACG_______________ ........................................................((((((((..((..((.(((((((........))))))).))..))....))))))..)).............................. (-13.87 = -14.09 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:18 2011