| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,290,225 – 16,290,318 |
| Length | 93 |
| Max. P | 0.783507 |
| Location | 16,290,225 – 16,290,318 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 79.68 |
| Shannon entropy | 0.38770 |
| G+C content | 0.43490 |
| Mean single sequence MFE | -27.50 |
| Consensus MFE | -13.96 |
| Energy contribution | -13.90 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16290225 93 - 21146708 -------------------GACACGCAACUGGAAGCUGGCAACUGUAAACUCA-----GCUGCGUAACGGAUGCGGAAACGGAAAUCCGAUAUUAUUGCGUUUGUAUUGUAUUAGAA -------------------...(((((.((((..((.(....).))....)))-----).))))).(((((((((....)((....)).........))))))))............ ( -25.00, z-score = -1.59, R) >droEre2.scaffold_4845 10434240 93 - 22589142 -------------------GAUACGCAACUGGAAGCUGGCAACUGUAAACUCA-----GCUGCGUAACGGAUGCGGAAACGGAAAUCCGAUAUUAUUGCGUUUGUAUUGUAUUAGAA -------------------..((((((.((((..((.(....).))....)))-----).))))))(((((((((....)((....)).........))))))))............ ( -26.40, z-score = -2.21, R) >droYak2.chr2R 8227932 93 + 21139217 -------------------CAUACGCAACUGGAAGCUGGCAACUGUAAACUCA-----GCUGCGUAACGGAUGCGGAAACGGAAAUCCGAUAUUAUUGCGUUUGUAUUGUAUUAGAA -------------------..((((((.((((..((.(....).))....)))-----).))))))(((((((((....)((....)).........))))))))............ ( -26.40, z-score = -2.14, R) >droSec1.super_1 13846904 93 - 14215200 -------------------GACACGCAACUGGAAGCUGGCAACUGUAAACUCA-----GCUGCGUAACGGAUGCGGAAACGGAAAUCCGAUAUUAUUGCGUUUGUAUUGUAUUAGAA -------------------...(((((.((((..((.(....).))....)))-----).))))).(((((((((....)((....)).........))))))))............ ( -25.00, z-score = -1.59, R) >droSim1.chr2R 14945355 93 - 19596830 -------------------GACACGCAACUGGAAGCUGGCAACUGUAAACUCA-----GCUGCGUAACGGAUGCGGAAACGGAAAUCCGAUAUUAUUGCGUUUGUAUUGUAUUAGAA -------------------...(((((.((((..((.(....).))....)))-----).))))).(((((((((....)((....)).........))))))))............ ( -25.00, z-score = -1.59, R) >droVir3.scaffold_12875 11677891 101 + 20611582 ----------GCAGAUC-AGCGAAUCCACAGUAAACUGGGAACUGUAAACUGC-----GCUGCGUAACGGAUGCGGAAACGGAAAUCCGAUAUUAUUGCGUUUGUAUUGUAUUAGAA ----------((((..(-((....(((.(((....)))))).)))....))))-----..((((..(((((((((....)((....)).........))))))))..))))...... ( -27.60, z-score = -1.52, R) >droMoj3.scaffold_6496 18247951 112 - 26866924 GAUGAAGAGGACGAAGCGGGCGAAUCCUCAGCAAACUGAGAACUGUAAACUGC-----GCUGCGUAACGGAUGCGGAAACGGAAAUCCGAUAUUAUUGCGUUUGUAUUGUAUUAGAA ..((..(((((((.......))..)))))..))..((((..((.(((....((-----((...(((.(((((.((....))...))))).)))....))))...))).)).)))).. ( -28.30, z-score = -0.88, R) >droGri2.scaffold_15245 16034530 101 + 18325388 ----------GCAGAGC-AGUGAAUCCACAGUAAACUGGCAACUGUAAACUGC-----GCUGCGUAACGGAUACGGAAACGGAAAUCCGAUAUUAUUGCGUUUGUAUUGUAUUAGAA ----------((((.((-(((......(((((.........)))))..)))))-----.))))....(((((.((....))...)))))...(((.((((.......)))).))).. ( -29.40, z-score = -2.26, R) >dp4.chr3 10352538 98 - 19779522 -------------------CAGCUGCAACUGUAGUUUUGGAGGAGCAAAAUCCCCAGGACUGCGUAACGGAUGCGGAAACGGAAAUCCGAUAUUAUUGCGUUUGUAUUCUAUUAGAA -------------------(((.(((((..((((((((((.(((......)))))))))))))....(((((.((....))...)))))......))))).)))............. ( -34.00, z-score = -3.81, R) >droPer1.super_4 5686484 97 - 7162766 -------------------CAGCUGCAACUGUAGUUUUGGAGGAGCAAAAUCCCCAGGACUGCGAAACGGAUGCGGAAACGGAAAUCCGAUAUUAUUGCGUUUGUAUUCUA-UAGAA -------------------(((.(((((.(((((((((((.(((......))))))))))))))...(((((.((....))...)))))......))))).))).......-..... ( -34.10, z-score = -4.13, R) >droWil1.scaffold_180697 4100442 87 - 4168966 -------------------------UCCUUACAACUGGCAAACUGUAAACUUC-----GCUGCGUAACGGAUGCGGAAACGGAAAUCCGAUAUUAUUGCGUUUGUAUUGUAUUAGAA -------------------------((..(((((...((((((.((((.....-----.((((((.....))))))...(((....)))......)))))))))).)))))...)). ( -21.30, z-score = -1.54, R) >consensus ___________________GAGACGCAACUGGAAGCUGGCAACUGUAAACUCC_____GCUGCGUAACGGAUGCGGAAACGGAAAUCCGAUAUUAUUGCGUUUGUAUUGUAUUAGAA ..........................................................((.(((((((((((.((....))...)))))......))))))..))............ (-13.96 = -13.90 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:17 2011