Locus 4902

Sequence ID dm3.chr2R
Location 16,281,538 – 16,281,603
Length 65
Max. P 0.891345
window6743

overview

Window 3

Location 16,281,538 – 16,281,603
Length 65
Sequences 6
Columns 68
Reading direction forward
Mean pairwise identity 88.69
Shannon entropy 0.21353
G+C content 0.43786
Mean single sequence MFE -14.10
Consensus MFE -11.84
Energy contribution -11.89
Covariance contribution 0.06
Combinations/Pair 1.08
Mean z-score -1.88
Structure conservation index 0.84
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.10
SVM RNA-class probability 0.891345
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 16281538 65 + 21146708
AUGGGAUCUUAAUUCGC---CAAUCUCAGUUGUCCAUUCGCAUUUUCGGCCAAUUACAUUUGGCCACU
.((((((..........---..))))))...................((((((......))))))... ( -14.00, z-score =  -1.62, R)
>droSim1.chr2R 14936493 65 + 19596830
AUGGGAUCUUAAUUCGC---CAAUCUCAGUUGUCCAUUCGCAUUUUCGGCCAAUUACAUUUGGCCACU
.((((((..........---..))))))...................((((((......))))))... ( -14.00, z-score =  -1.62, R)
>droSec1.super_1 13838345 65 + 14215200
AUGGGAUCUCAAUUCGC---CAAUCUCAGUUGUCCAUUCGCAUUUUCGGCCAAUUACAUUUGGCCACU
.((((((..........---..))))))...................((((((......))))))... ( -14.00, z-score =  -1.60, R)
>droYak2.chr2R 8219070 65 - 21139217
AUGGGAUCUUAAUUCGC---CAAUCUCAGUUGUCCACUCGCAUUUUCGGCCAAUUACAUUUGGCCACU
.((((((..........---..))))))...................((((((......))))))... ( -14.00, z-score =  -1.69, R)
>droEre2.scaffold_4845 10425520 65 + 22589142
AUGGGAUCUCAAUUCGC---CAAUCUCAGUUGUCCGUUCGCAUUUUCGGCCAAUUACAUUUGGCCACU
.((((((..........---..))))))...................((((((......))))))... ( -14.00, z-score =  -1.35, R)
>droAna3.scaffold_13266 16874558 68 - 19884421
AUUUGAUCUUCAUUUACACCCCAUCACAGUUGGCCAAUCAUAUCGUUGGCCAAUUACAUUUGCCCUCU
...........................(((((((((((......)))))))))))............. ( -14.60, z-score =  -3.38, R)
>consensus
AUGGGAUCUUAAUUCGC___CAAUCUCAGUUGUCCAUUCGCAUUUUCGGCCAAUUACAUUUGGCCACU
.((((((...............))))))...................((((((......))))))... (-11.84 = -11.89 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:15 2011