| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,281,199 – 16,281,253 |
| Length | 54 |
| Max. P | 0.948741 |
| Location | 16,281,199 – 16,281,253 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 96.66 |
| Shannon entropy | 0.05394 |
| G+C content | 0.60063 |
| Mean single sequence MFE | -18.28 |
| Consensus MFE | -17.80 |
| Energy contribution | -17.80 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.948741 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16281199 54 - 21146708 UUCAGCGACCGCGUCGUUCUGGCGACCAAUCCUGCCGCUGCAAUCGGUUGCCAU ...((((((...)))))).((((((((.((..(((....))))).)))))))). ( -18.40, z-score = -1.49, R) >droEre2.scaffold_4845 10425181 53 - 22589142 UUCAGCGACCACGUCGUUC-GGCGACCAAUCCUGCCACUGCAAUCGGUUGCCAU ...((((((...)))))).-(((((((.((..(((....))))).))))))).. ( -18.10, z-score = -2.52, R) >droYak2.chr2R 8218708 53 + 21139217 UUCAGCGACCACGUCGUUC-GGCGACCAAUCCUGCCACUGCAAUCGGUUGCCAU ...((((((...)))))).-(((((((.((..(((....))))).))))))).. ( -18.10, z-score = -2.52, R) >droSec1.super_1 13837949 54 - 14215200 UUCAGCGACCGCGUCGUUCUGGCGACCAAUCCUGCCGCUGCAAUCGGUUGCCAU ...((((((...)))))).((((((((.((..(((....))))).)))))))). ( -18.40, z-score = -1.49, R) >droSim1.chr2R 14936109 54 - 19596830 UUCAGCGACCGCGUCGUUCUGGCGACCAAUCCUGCCGCUGCAAUCGGUUGCCAU ...((((((...)))))).((((((((.((..(((....))))).)))))))). ( -18.40, z-score = -1.49, R) >consensus UUCAGCGACCGCGUCGUUCUGGCGACCAAUCCUGCCGCUGCAAUCGGUUGCCAU ...((((((...))))))..(((((((.((..(((....))))).))))))).. (-17.80 = -17.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:14 2011