| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,277,666 – 16,277,760 |
| Length | 94 |
| Max. P | 0.694596 |
| Location | 16,277,666 – 16,277,760 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 77.99 |
| Shannon entropy | 0.30629 |
| G+C content | 0.56435 |
| Mean single sequence MFE | -31.93 |
| Consensus MFE | -19.77 |
| Energy contribution | -20.55 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.694596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16277666 94 - 21146708 ------------CCGCCAGCCACAAUGUGCCGCCGCCCCCCCUCCAUGGGUGGAUACCCACCUGGUGGCUGCUCAUUUAAACUAUUUAAUAUUGGCACCUGCCAGC ------------..((.((((((...(((...((((((.........)))))).....)))...))))))))...................(((((....))))). ( -31.60, z-score = -1.78, R) >droEre2.scaffold_4845 10421580 98 - 22589142 CCACCUUCCGCCAUACUAACCACUAUGUGCCG------CCCCUUCAUGG--GGAUCCCCACCUGGUGGCUGCUCAUUUAAACUAUUUAAUAUUGGCACCUGCCAGG .........((((((........)))).))..------((((.....))--)).......(((((..(.(((.((.((((.....))))...))))).)..))))) ( -27.50, z-score = -1.87, R) >droSec1.super_1 13834428 97 - 14215200 ---CCGCCGAGCCCACCAGCCACAAUGUGCCG-----CCCCCUUUUUGGG-GGAUGCCCACCUGGUGGCUGCUCAUUUAAACUAUUUAAUAUUGGCACCUGCCAGG ---...(((((((((((((......((.((..-----(((((.....)))-))..)).)).)))))))..))))..................((((....)))))) ( -36.70, z-score = -2.31, R) >consensus ___CC__C___CCCACCAGCCACAAUGUGCCG_____CCCCCUUCAUGGG_GGAUACCCACCUGGUGGCUGCUCAUUUAAACUAUUUAAUAUUGGCACCUGCCAGG ................(((((((...(((........(((((.....))).)).....)))...)))))))....................(((((....))))). (-19.77 = -20.55 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:14 2011