| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,268,455 – 16,268,565 |
| Length | 110 |
| Max. P | 0.928624 |
| Location | 16,268,455 – 16,268,565 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 85.29 |
| Shannon entropy | 0.24923 |
| G+C content | 0.35243 |
| Mean single sequence MFE | -20.76 |
| Consensus MFE | -14.14 |
| Energy contribution | -15.14 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.928624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16268455 110 + 21146708 GAAUUAAUAGACAGCGCCUAAUGGGCCACAGGCCACAUAUACUAUAUGUACAUACAUAUGUAUUAUACGUAUAAUUCCCAUAUUUACCCAUUUCUGUUAAUGAUUUCCAC ..(((((((((.........(((((((...)))).)))....((((((((.((((....))))..))))))))...................)))))))))......... ( -21.90, z-score = -1.76, R) >droYak2.chr2R 8205682 88 - 21139217 AAAUUAAUAGACAGCGCCUAAUGGGCCAAAGCCCACAUAUA----------------------UGUAUGUAUAAUUCGCAUAUUUACCCAUUUCUGUUAAUGAUUUCCAC ..(((((((((..........(((((....)))))....((----------------------.((((((.......)))))).))......)))))))))......... ( -17.70, z-score = -1.99, R) >droEre2.scaffold_4845 10412406 98 + 22589142 AAAUUAAUAGACAGCGCCUAAUGGGCCAAAGCCCACAUAUA-----------CAUAUACGUA-CGAACGUGUAAUUCCCAUAUUUACCCAUUUCUGUUAAUGAUUUCCAC ..(((((((((..........(((((....)))))......-----------..(((((((.-...)))))))...................)))))))))......... ( -21.00, z-score = -3.16, R) >droSec1.super_1 13825336 99 + 14215200 GAAUUAAUAGACAGCGCCUAAUGGGCCAAAGCCCACAUAUA-----------UACAUAUGUAUUAUGCGUAUAAUUCUCAUAUUUAUCCAUUUCUGUUAAUGAUUUCCAC ..(((((((((..((((.((((((((....))))((((((.-----------...)))))))))).))))((((.........)))).....)))))))))......... ( -21.90, z-score = -2.83, R) >droSim1.chr2R 14923486 99 + 19596830 GAAUUAAUAGACAGCGCCUAAUGGGCCAAAGCCCACAUAUA-----------UACAUAUGUAUUAUGCGUAUAAUUCCCAUAUUUACCCAUUUCUGUUAAUGAUUUCCAC ..(((((((((..((((.((((((((....))))((((((.-----------...)))))))))).))))..(((......)))........)))))))))......... ( -21.30, z-score = -2.82, R) >consensus GAAUUAAUAGACAGCGCCUAAUGGGCCAAAGCCCACAUAUA___________UACAUAUGUAUUAUACGUAUAAUUCCCAUAUUUACCCAUUUCUGUUAAUGAUUUCCAC ..(((((((((..........(((((....)))))....................((((((.....))))))....................)))))))))......... (-14.14 = -15.14 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:11 2011