| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,251,212 – 16,251,317 |
| Length | 105 |
| Max. P | 0.902247 |
| Location | 16,251,212 – 16,251,317 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 88.69 |
| Shannon entropy | 0.21530 |
| G+C content | 0.40472 |
| Mean single sequence MFE | -25.22 |
| Consensus MFE | -18.49 |
| Energy contribution | -19.38 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.902247 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16251212 105 + 21146708 CACAUGCUCCUACGAACAUCCGACUGCCGU-UUGUCGCUGCGUAUUGGUACGUGCCGAAUGGCAACUGGAAAACUUUUUUAAUUUAAAAAAAUUCUGU-GUUCUUUC .............(((((((((..((((((-(((..((.(((((....))))))))))))))))..))))....(((((((...)))))))......)-)))).... ( -26.80, z-score = -2.62, R) >droSim1.chr2R 14915456 105 + 19596830 CACAUACUCCUACGAACAUCCGACUGCCGU-UUGUCGCUGCGUAUUGGUACGUGCCGAAUGGCAACUGGAAAACUUUUUUAAUUUAAAAAAAUUCUGU-GUUCUUUC .............(((((((((..((((((-(((..((.(((((....))))))))))))))))..))))....(((((((...)))))))......)-)))).... ( -26.80, z-score = -3.01, R) >droSec1.super_1 13817324 105 + 14215200 CACAUACUCCUACGAACAUCCGACUGCCGU-UUGUCGCUGCGUAUUGGUACGUGCCGAAUGGCAACUGGAAAACUUUUUUAAUUUAAAAAAAUUCUGU-GUUCUUUC .............(((((((((..((((((-(((..((.(((((....))))))))))))))))..))))....(((((((...)))))))......)-)))).... ( -26.80, z-score = -3.01, R) >droYak2.chr2R 8197200 104 - 21139217 CACAUACCCCUACGAACAUCCGAAUGCCGU-UUGUCGCUGCGUAUUGCUACGUGCCGAAUGGCAACUGGAAAACUUUUUUAAUUUAAAAAAAUUCUAU-GUUCUUC- .............(((((((((..((((((-(((..((.(((((....))))))))))))))))..))))....(((((((...)))))))......)-))))...- ( -26.50, z-score = -3.80, R) >droEre2.scaffold_4845 10404193 103 + 22589142 CACAUGCCCCUACGAACAUCCGACUGCCGU-UUGUCGCUGCGUAUUGGUACGUGCCGAAUGGCAACUGGAAAACUUUUUUAAUUUAAAAAA-CUCUGU-GUUCUUC- .............(((((((((..((((((-(((..((.(((((....))))))))))))))))..))))....(((((((...)))))))-.....)-))))...- ( -26.50, z-score = -2.53, R) >droGri2.scaffold_15245 15994835 103 - 18325388 UAUAUAUAUAUUAGUACAUAUAUCUGCGGCGUUGUCGUUGCGUAUUGGUACGUGCCGAAUGGCUACUG-AAAACUUUUUUAAUUUACAAAAAUUGUGUUGCUCU--- ............((((((((.....((((((....))))))...(..(((...(((....))))))..-).......................)))).))))..--- ( -17.90, z-score = 0.76, R) >consensus CACAUACUCCUACGAACAUCCGACUGCCGU_UUGUCGCUGCGUAUUGGUACGUGCCGAAUGGCAACUGGAAAACUUUUUUAAUUUAAAAAAAUUCUGU_GUUCUUU_ .............((((.((((..((((((....(((..(((((....)))))..)))))))))..))))....(((((((...)))))))........)))).... (-18.49 = -19.38 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:06 2011