| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,248,366 – 16,248,456 |
| Length | 90 |
| Max. P | 0.836111 |
| Location | 16,248,366 – 16,248,456 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 91.61 |
| Shannon entropy | 0.15209 |
| G+C content | 0.50556 |
| Mean single sequence MFE | -28.18 |
| Consensus MFE | -25.29 |
| Energy contribution | -25.87 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.836111 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16248366 90 - 21146708 ------GAUGGUGGAGGA---GGCAUAAGACCCUCAACUGGAAAGUGGCAGGAUAAUAAGAAUUCAGCAUCCUGCGAUGAUGCUAAGUAGCCGCCGUUC ------((((((((..((---((........)))).(((((...((.(((((((..............))))))).))....)).)))..)))))))). ( -28.64, z-score = -1.92, R) >droSim1.chr2R 14912774 90 - 19596830 ------GAUGGUGGUGGA---GGCAUAAGACCGUCAACUGGAAAGUGGCAGGAUAAUAAGGAUUCAGCAUCCUGCGAUGAUGCUAAGUAGCCGCCGUUC ------(((((((((...---(((((.....((((.(((....))).(((((((..............)))))))))))))))).....))))))))). ( -31.54, z-score = -2.63, R) >droSec1.super_1 13814613 90 - 14215200 ------GAUGGUGGUGGA---GCCAUAAGACCGUCAACUGGAAAGUGGCAGGAUAAUAAGGAUUCAGCAUCCUGCGAUGAUGCUAAGUAGCCGCCGUUC ------(((((((((.((---(((.((..(((((((.((....)))))).)).)..)).)).)))((((((.......)))))).....))))))))). ( -28.50, z-score = -1.60, R) >droYak2.chr2R 8194663 96 + 21139217 GAUGGUAGUGGUGGAGGA---GGCAUAAGACCGUCAACUGGAAAGUGGCAGGAUAAUAAGGAUUCAGCAUCCUGCGAUGAUGCUAAGUAGCCGCCGUUC .........(((((..(.---(((((.....((((.(((....))).(((((((..............))))))))))))))))...)..))))).... ( -27.94, z-score = -1.05, R) >droEre2.scaffold_4845 10401605 90 - 22589142 ------GAUGGUGGAGGA---GGCAUAAGACCGUCAACUGGAAAGUGGCAGGAUAAUAAGGAUUCAGCAUCCUGCGAUGAUGCUAAGUAGCCGCCGUUC ------((((((((..(.---(((((.....((((.(((....))).(((((((..............))))))))))))))))...)..)))))))). ( -29.94, z-score = -2.29, R) >droAna3.scaffold_13266 16850919 96 + 19884421 ---GGCGAUAGAAGAAGAUGCAGCAUAAGACCGACAACUGGAAAGUGGCAGGAUAAUAAGGAUUCAGCAUCCUGCGAUGAUGCUAAGUAGCCGCCGUUC ---((((......(......)(((((....(((.....)))...((.(((((((..............))))))).)).))))).......)))).... ( -22.54, z-score = -0.27, R) >consensus ______GAUGGUGGAGGA___GGCAUAAGACCGUCAACUGGAAAGUGGCAGGAUAAUAAGGAUUCAGCAUCCUGCGAUGAUGCUAAGUAGCCGCCGUUC ......((((((((..(....(((((.....((((.(((....))).(((((((..............))))))))))))))))...)..)))))))). (-25.29 = -25.87 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:05 2011