| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,246,913 – 16,247,006 |
| Length | 93 |
| Max. P | 0.500000 |
| Location | 16,246,913 – 16,247,006 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 61.03 |
| Shannon entropy | 0.74203 |
| G+C content | 0.49859 |
| Mean single sequence MFE | -30.20 |
| Consensus MFE | -5.78 |
| Energy contribution | -5.17 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.81 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.19 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 16246913 93 - 21146708 AUUUCAAAUUGCUCCUGGUCAUAACUGGCCAGGGCCAAAAG------------CUUCGCUGUUGACUCUAACGCCAC-AAGCUCAAACUACUACAGC----GCAGUGCCC ........(((..((((((((....))))))))..)))..(------------((.((((((..........((...-..))..........)))))----).))).... ( -27.45, z-score = -2.22, R) >droPer1.super_4 5645136 110 - 7162766 AAUCCAAUAUUUCUCUUGCCAUAAUUAGCCCCAGCAAACGAGGGUGUCCCCUCUCUGGGUGUGGAUUUUGGCACCACAAAAGCCGGACUAUGGCUGCUCCAGCAGCUCUC ..(((...........(((((.((((.(((((((.....(((((....))))).))))).)).)))).)))))...........)))....((((((....))))))... ( -37.25, z-score = -2.19, R) >dp4.chr3 10311322 110 - 19779522 AAUCCAAUAUUUCUCUUGCCAUAAUUAGCCCCAGCAAACGAGGGUGUCCCCUCUCUGGGUGUGGAUUUUGGCGCCACAAAAGCCGGACUAUGGCUGCUCCAGCAGCUCUC ..(((............((((.((((.(((((((.....(((((....))))).))))).)).)))).))))((.......)).)))....((((((....))))))... ( -37.90, z-score = -2.10, R) >droEre2.scaffold_4845 10400156 91 - 22589142 AUUUCAAAUUGCUCCUGGCCAUAACUGGGCAGGGCCAAAAG------------CUUGGCUGUUGACUCUAACACCAC-AAGCUGGAACUACCACAGC----GCAGUGC-- .......(((((.((((.(((....))).))))((....((------------(((((.(((((....))))).).)-)))))((.....))...))----)))))..-- ( -28.60, z-score = -1.04, R) >droYak2.chr2R 8193134 91 + 21139217 AUUUCCAAUUGCUCCUGGCCAUAACUGGCCAGGGCCAAAAG------------CUUCGCUGUUGACUCUAACGCCAC-AAGCUCGUACAACAACAGC----GCAGUGC-- ........(((..((((((((....))))))))..)))..(------------((.((((((((........((...-..))........)))))))----).)))..-- ( -33.39, z-score = -3.69, R) >droSec1.super_1 13813136 93 - 14215200 AUUUCAAAUUGCUCCUGGUCAUAACUGGCCAGGGCCAAAAG------------CUUCGCUGUUGACUCUAUCGCCAC-AAGCUCGAACUACUACAGC----GCAGUGCCC ........(((..((((((((....))))))))..)))..(------------((.((((((..........((...-..))..........)))))----).))).... ( -27.45, z-score = -1.93, R) >droSim1.chr2R 14911290 93 - 19596830 AUUUCAAAUUGCUCCUGGUCAUAACUGGCCAGGGCCAAAAG------------CUUCGCUGUUGACUCUAACGCCAC-AAGCUCGAACUACUACAGC----GCAGUGCCC ........(((..((((((((....))))))))..)))..(------------((.((((((..........((...-..))..........)))))----).))).... ( -27.45, z-score = -1.91, R) >droGri2.scaffold_15245 15989892 94 + 18325388 -------AUUGCAACUAAUUAUAAUUAGUUGAAAGUGCAUU---UCUGACAAGCAUUGCAUUGGUUACAUAAACGACCACAAAUGUGCCAUCAAAAU----GCUGGCC-- -------....((((((((....)))))))).....(((((---(.(((...((((.....(((((........))))).....))))..)))))))----)).....-- ( -22.10, z-score = -1.37, R) >consensus AUUUCAAAUUGCUCCUGGCCAUAACUGGCCAGGGCCAAAAG____________CUUCGCUGUUGACUCUAACGCCAC_AAGCUCGAACUACUACAGC____GCAGUGC_C .........((.((.((((((....)))))).)).))...................((((((.......................................))))))... ( -5.78 = -5.17 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:04 2011