| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,238,604 – 16,238,660 |
| Length | 56 |
| Max. P | 0.536974 |
| Location | 16,238,604 – 16,238,660 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 70.02 |
| Shannon entropy | 0.58016 |
| G+C content | 0.31951 |
| Mean single sequence MFE | -11.35 |
| Consensus MFE | -3.77 |
| Energy contribution | -4.05 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.536974 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16238604 56 + 21146708 AAUUUAACAUUGUUUGCUUUAGUUGAAUCGCCAGGU-UGACUCAGC-AAACUAAAAUA ...........(((((((..((((.((((....)))-))))).)))-))))....... ( -12.30, z-score = -2.14, R) >droSim1.chr2R 14902873 56 + 19596830 AAUUUAACAUUGUUUGCUUUAGUUGAAUCGGCAGGU-UGACUGAGC-AAACUAAAAUA ...........((((((((.((((.((((....)))-)))))))))-))))....... ( -14.50, z-score = -2.78, R) >droSec1.super_1 13804864 56 + 14215200 AAUUUAACAUUGUUUGCUUUAGUUGAAUCGGCAGGU-UGACUGAGC-AAACUAAAAUA ...........((((((((.((((.((((....)))-)))))))))-))))....... ( -14.50, z-score = -2.78, R) >droEre2.scaffold_4845 10391542 51 + 22589142 AAUUUAACAUUGUUUGCUUUAGUUGAAACGGCAGUU-UGACUGAGCCAAAUA------ ..........((((((.(((((((.((((....)))-)))))))).))))))------ ( -11.20, z-score = -1.68, R) >droAna3.scaffold_13266 16841804 55 - 19884421 AAUUUAACAUUGUUUG-UCUAGUUCACCUGUCCGUU-CAAUUGAGC-AAAUAAAAACA .........(((((((-..(((((.((......)).-.)))))..)-))))))..... ( -7.20, z-score = -1.18, R) >dp4.chr3 10302085 58 + 19779522 AUUUUCAUGUUCUUGGGUAUUGUUUAUUUACGAGGAGUAGUUUUGCUGCAAAAUAGAA ...(((...((((((.(((.....)))...))))))((((.....))))......))) ( -8.40, z-score = -0.26, R) >consensus AAUUUAACAUUGUUUGCUUUAGUUGAAUCGGCAGGU_UGACUGAGC_AAACAAAAAUA ...........((((((((.(((((.(((....))).))))))))).))))....... ( -3.77 = -4.05 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:03 2011