| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,215,388 – 16,215,484 |
| Length | 96 |
| Max. P | 0.523743 |
| Location | 16,215,388 – 16,215,484 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 99.38 |
| Shannon entropy | 0.01011 |
| G+C content | 0.45208 |
| Mean single sequence MFE | -21.72 |
| Consensus MFE | -21.96 |
| Energy contribution | -21.72 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -0.75 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16215388 96 + 21146708 UGAAAUGGUAAAGUGUGUUGUCGCGUUCGCCAAACCGAAUCCGAAACAGUAAACCAAACCCUAACCGAUUGGGGGUAAUAAACAUUGAAACCCGAG ......(((..((((((((.(((.(((((......))))).))))))...........((((((....)))))).......)))))...))).... ( -20.80, z-score = -0.46, R) >droEre2.scaffold_4845 10367949 96 + 22589142 UGAAAUGGUAAAGUGUGUUGUCGCGUUCGCCAAACCGAAUCCGAAACAGUAAACCAAACCCUAACCGAUUGGGGGUAAUAAACACUGAAACCCGAG ......(((..((((((((.(((.(((((......))))).))))))...........((((((....)))))).......)))))...))).... ( -23.10, z-score = -1.19, R) >droYak2.chr2R 8152376 96 - 21139217 UGAAAUGGUAAAGUGUGUUGUCGCGUUCGCCAAACCGAAUCCGAAACAGUAAACCAAACCCUAACCGAUUGGGGGUAAUAAACACUGAAACCCGAG ......(((..((((((((.(((.(((((......))))).))))))...........((((((....)))))).......)))))...))).... ( -23.10, z-score = -1.19, R) >droSec1.super_1 13781432 96 + 14215200 UGAAAUGGUAAAGUGUGUUGUCGCGUUCGCCAAACCGAAUCCGAAACAGUAAACCAAACCCUAACCGAUUGGGGGUAAUAAACAUUGAAACCCGAG ......(((..((((((((.(((.(((((......))))).))))))...........((((((....)))))).......)))))...))).... ( -20.80, z-score = -0.46, R) >droSim1.chr2R 14880228 96 + 19596830 UGAAAUGGUAAAGUGUGUUGUCGCGUUCGCCAAACCGAAUCCGAAACAGUAAACCAAACCCUAACCGAUUGGGGGUAAUAAACAUUGAAACCCGAG ......(((..((((((((.(((.(((((......))))).))))))...........((((((....)))))).......)))))...))).... ( -20.80, z-score = -0.46, R) >consensus UGAAAUGGUAAAGUGUGUUGUCGCGUUCGCCAAACCGAAUCCGAAACAGUAAACCAAACCCUAACCGAUUGGGGGUAAUAAACAUUGAAACCCGAG ......(((..((((((((.(((.(((((......))))).))))))...........((((((....)))))).......)))))...))).... (-21.96 = -21.72 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:01 2011