| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,199,903 – 16,200,001 |
| Length | 98 |
| Max. P | 0.500000 |
| Location | 16,199,903 – 16,200,001 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 95.92 |
| Shannon entropy | 0.06623 |
| G+C content | 0.48214 |
| Mean single sequence MFE | -29.75 |
| Consensus MFE | -25.75 |
| Energy contribution | -25.75 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 16199903 98 - 21146708 GCCCACUCUCACAUCCGGUGAUUCACGUGCAAUUAGCAACAAUUGCGCGUGCCUGCGAUUGAAUACGCAAAUGCGGCUAUUUUGAAUGUGCCACAUAU ................((((((((((((((((((......))))))))))(((.(((.(((......))).))))))......)))).))))...... ( -27.30, z-score = -0.83, R) >droSim1.chr2R 14858756 98 - 19596830 GCCCACUCUCACAUCCGGUGAUUCACGUGCAAUUAGCAACAAUUGCGCGUGCCUGCGCUUGAAUACGCAAAUGCGGCUAUUUUGAAUGUGCCACAUAU ...(((..(((..((.((((...(((((((((((......)))))))))))....)))).))...(((....))).......)))..)))........ ( -28.10, z-score = -0.92, R) >droSec1.super_1 13765772 98 - 14215200 GCCCACUCUCACAUCCGGUGAUUCACGUGCAAUUAGCAACAAUUGCGCGUGCCUGCGAUUGAAUACGCAAAUGCGGCUAUUUUGAAUGUGCCACAUAU ................((((((((((((((((((......))))))))))(((.(((.(((......))).))))))......)))).))))...... ( -27.30, z-score = -0.83, R) >droEre2.scaffold_4845 10351130 98 - 22589142 ACCCACUCUCACAUCCGGUGAUUCACGUGCAAUUAGCAACAAUUGCGCGUGCCUGCGAUUGAGAACUCAAAUGCGGGUACUUUGAAUGUGGCACAUAU ..((((..((((.....))))((((.((((((((......))))))))(((((((((.((((....)))).)))))))))..)))).))))....... ( -36.30, z-score = -3.78, R) >consensus GCCCACUCUCACAUCCGGUGAUUCACGUGCAAUUAGCAACAAUUGCGCGUGCCUGCGAUUGAAUACGCAAAUGCGGCUAUUUUGAAUGUGCCACAUAU .........(((((.(((.....(((((((((((......))))))))))).(((((.(((......))).))))).....))).)))))........ (-25.75 = -25.75 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:00 2011