| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,191,750 – 16,191,841 |
| Length | 91 |
| Max. P | 0.971992 |
| Location | 16,191,750 – 16,191,841 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 86.36 |
| Shannon entropy | 0.18164 |
| G+C content | 0.38917 |
| Mean single sequence MFE | -26.10 |
| Consensus MFE | -21.75 |
| Energy contribution | -20.77 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.86 |
| SVM RNA-class probability | 0.971992 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16191750 91 + 21146708 UUUGAGGAGGCGCACAAAAUUAAAUUGUUUGCUUUUUCGAAAAUUUGACAUACAGCAGAUAUGACGUGGUUGUUGUUGUUGUUGUCACCUU ((((((((((((.((((.......)))).))))))))))))....(((((.(((((((....((((....)))).)))))))))))).... ( -27.10, z-score = -2.85, R) >dp4.chr3 9848583 82 + 19779522 UUUAAGGGGGCGCACAAAAUUAAAUUGUUUGCUUUUU-GCGAAUUUGACAUAUAGCAGAU--------GUUGCUGUUGUCGCUGUCGCCUU ...((((.(((((.............((((((.....-))))))..((((.(((((((..--------.))))))))))))).))).)))) ( -25.60, z-score = -2.37, R) >droPer1.super_4 5166076 82 + 7162766 UUUAAGGGGGCGCACAAAAUUAAAUUGUUUGCUUUUU-GCGAAUUUGACAUAUAGCAGAU--------GUUGCUGUUGUCGCUGUCGCCUU ...((((.(((((.............((((((.....-))))))..((((.(((((((..--------.))))))))))))).))).)))) ( -25.60, z-score = -2.37, R) >consensus UUUAAGGGGGCGCACAAAAUUAAAUUGUUUGCUUUUU_GCGAAUUUGACAUAUAGCAGAU________GUUGCUGUUGUCGCUGUCGCCUU ...((((.(((((.............((((((......))))))..((((.(((((((...........))))))))))))).))).)))) (-21.75 = -20.77 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:37:56 2011