| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,183,574 – 16,183,665 |
| Length | 91 |
| Max. P | 0.719609 |
| Location | 16,183,574 – 16,183,665 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 82.10 |
| Shannon entropy | 0.27109 |
| G+C content | 0.46459 |
| Mean single sequence MFE | -18.43 |
| Consensus MFE | -14.18 |
| Energy contribution | -15.17 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.719609 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16183574 91 + 21146708 CCACAUCAGCACAUCGGCACAUCAGCACCUCGAUGAUGAGCAUGUGCUCUCGGAUUCGGAUUCCAAAAGUGAAUCAGCACACCUUUUAAUA .(((...(((((((..((.(((((.(.....).))))).)))))))))...(((.......)))....))).................... ( -21.00, z-score = -1.01, R) >droSim1.chr2R 14842490 75 + 19596830 ----------------CCACAUCAGCACCUCGAUGAUGAGCAUGUGCUCACGGAUUCGGAUUCCGAAACUGAAUCAGCACACCUUUUAAUA ----------------...(((((.(.....).)))))....((((((..(((.(((((...))))).)))....)))))).......... ( -18.30, z-score = -1.91, R) >droSec1.super_1 13749529 83 + 14215200 --------CCACAUCAGCACAUCAGCACCUCGAUGAUGAGCAUGUGCUCACGGAUUCGGAUUCCGAAACUGAAUCAGCACACCUUUUAAUA --------........((.(((((.(.....).))))).)).((((((..(((.(((((...))))).)))....)))))).......... ( -21.60, z-score = -2.49, R) >droEre2.scaffold_4845 10335064 69 + 22589142 ----------------CCACAUCAGCACCUCGAUGAUGAGCAUGUGCUC------UCGGAAUCCAAAACUGAAUCAGCACACCUUUUAAUA ----------------...(((((.(.....).)))))....((((((.------((((.........))))...)))))).......... ( -12.80, z-score = -1.04, R) >consensus ________________CCACAUCAGCACCUCGAUGAUGAGCAUGUGCUCACGGAUUCGGAUUCCAAAACUGAAUCAGCACACCUUUUAAUA ...................(((((.(.....).)))))....((((((....(((((((.........))))))))))))).......... (-14.18 = -15.17 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:37:56 2011