| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,162,069 – 16,162,135 |
| Length | 66 |
| Max. P | 0.520800 |
| Location | 16,162,069 – 16,162,135 |
|---|---|
| Length | 66 |
| Sequences | 8 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 54.50 |
| Shannon entropy | 0.91493 |
| G+C content | 0.39393 |
| Mean single sequence MFE | -14.04 |
| Consensus MFE | -3.70 |
| Energy contribution | -3.38 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 2.00 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.520800 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16162069 66 - 21146708 --GGACCAAAGCACAGCAAUGUUGC-UUUCGUUGAGGGUAUUCAAUGGCCUUUCAAUAUGUAAGCUUAA--- --((.((((((((((....)).)))-))).((((((....))))))))))...................--- ( -14.50, z-score = -0.42, R) >droAna3.scaffold_13266 16762713 72 + 19884421 AUCGAUAGGAUUUUAGUAAGCUUGUGUGUUAUCGAUAAAAAGUAUCUCCAAUCUAAAAAAAAUAUACCAAAA ((((((((.((...((....))...)).)))))))).................................... ( -10.00, z-score = -1.77, R) >droEre2.scaffold_4845 10313722 66 - 22589142 --AGACCAAUUCACAGCGAUUUUGA-UUCCGUUGAGGGUAUUCAGCUGGCUUUAAGCAUGCUAGCUUAC--- --.((...((((.(((((.......-...))))).))))..))(((((((.........)))))))...--- ( -15.80, z-score = -0.93, R) >droYak2.chr2R 8098578 66 + 21139217 --AGACCAACGCACAACGAUUUUGA-UUUCGUUGAGGGUACUCAGCUGGCUUUAAGCAUGUUAGCUUAC--- --.((...((.(.((((((......-..)))))).).))..))(((((((.........)))))))...--- ( -16.70, z-score = -1.66, R) >droSec1.super_1 13728090 66 - 14215200 --GGACCAAAUCACAGCAAUGUUGC-UUUCGUUGAGGGUAUUCAACGGCCUGUUAAUAUGUAAGCUUAA--- --((.((.......((((....)))-)...((((((....))))))))))...................--- ( -12.50, z-score = 0.10, R) >droSim1.chr2R 14820736 66 - 19596830 --GGACCAAAGCACAGCAAUGUUGC-UUUCGUUGAGGGUAUUCAACGGCCUGUUAAGAUGUAAGCUUAA--- --((.((((((((((....)).)))-))).((((((....))))))))))..(((((.......)))))--- ( -17.40, z-score = -1.10, R) >droWil1.scaffold_180701 2698381 52 - 3904529 --UGAACUGCUAACGGUUGUUUUGA-CUGAUUUGA--CUUAUUAAAUUUAAGUUGGC--------------- --......((((((((((.....))-))(((((((--....)))))))...))))))--------------- ( -8.90, z-score = -1.98, R) >droGri2.scaffold_15245 13621078 66 - 18325388 --GGACCAGGUAGCAUUUUUGUUGU-UGUUGUUGAGGUUUCUCAGCUGCUUGUCCGCAUAAAUUUUCCA--- --((((.((((((((....))))..-....((((((....)))))).))))))))..............--- ( -16.50, z-score = -1.50, R) >consensus __GGACCAAAUCACAGCAAUGUUGA_UUUCGUUGAGGGUAUUCAACUGCCUGUUAACAUGUAAGCUUAA___ ..............................((((((....)))))).......................... ( -3.70 = -3.38 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:37:55 2011