| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,402,662 – 3,402,766 |
| Length | 104 |
| Max. P | 0.702618 |
| Location | 3,402,662 – 3,402,766 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 83.42 |
| Shannon entropy | 0.31362 |
| G+C content | 0.53997 |
| Mean single sequence MFE | -29.47 |
| Consensus MFE | -21.15 |
| Energy contribution | -21.82 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.702618 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3402662 104 - 23011544 UGGAAAGUUCGUUCCGCUUUUCG---CUGCCUGCUGGGUGUCGAGAGUGCCUCUCCGUAUCCAAUUUCCCCCAGCAGGAUCUGCCUCUUCCGCACACUCACAUAACC .(((((((.......)))))))(---(..(((((((((((..(((((...)))))..))..........)))))))))....))....................... ( -28.20, z-score = -1.30, R) >droAna3.scaffold_12916 2864064 100 + 16180835 AGAAAAGUUCCACCGCCAUUCCGACGCCACCUGCUGGGUGUCGAGAGU-UCUCUCAGUUUGGAGUCC-CCUCGGCAGGAUCUGCCACUUCCACUCGCACACA----- ..............((.(((((((((((........))))))((((..-..)))).....)))))..-....(((((...)))))..........)).....----- ( -27.90, z-score = -0.01, R) >droEre2.scaffold_4929 3432425 103 - 26641161 UGGAAAGUUCGUUCCGCUUUUCG--CCUGCCUGCUGGGUGUCGAGAGUUCCUCUUGGUAUCCAGUU--UCCCGGCAGGAUCUGCCACUUCCACACAAUCACAUAACG .(((((((.......))))))).--((((((.(((((((..((((((...))))))..))))))).--....))))))............................. ( -35.30, z-score = -2.94, R) >droYak2.chr2L 3388162 102 - 22324452 UGGAAAGUUCGUUCCGCUUUUCG---CUGCCUGCUGGGUGUCGAGAGUUCCUCUCCGUAUCCAAUU--UCCCAGCAGGAUCUGCCACAUCCACACAAUCACAUAACC .(((((((.......)))))))(---(..(((((((((((..(((((...)))))..)).......--.)))))))))....))....................... ( -28.40, z-score = -2.19, R) >droSec1.super_5 1549484 103 - 5866729 UGGAAAGUUCGUUCCUAUUUUCG---CUGCCUGCUGGGUGUCGAGAGUGCCUCUCGGUAUCCAAUUU-CCCCAGCAGGAUCUGCCUCUUCCACACACUCACAUAAAC ..((((((........))))))(---(..((((((((((..((((((...))))))..)........-.)))))))))....))....................... ( -30.70, z-score = -2.30, R) >droSim1.chr2L 3341184 103 - 22036055 UGGAAAGUUCGUUCCGCUUUUCG---CUGCCUGCUGGGUGUCGAGAGUGCCUCUCGGUAUCCAAUUU-CCCCAACAGGAUCUGCCUCUUCCACACACUCACAUAACC (((((((.....(((.......(---(.....))(((((..((((((...))))))..)))))....-........))).....)).)))))............... ( -26.30, z-score = -0.83, R) >consensus UGGAAAGUUCGUUCCGCUUUUCG___CUGCCUGCUGGGUGUCGAGAGUGCCUCUCGGUAUCCAAUUU_CCCCAGCAGGAUCUGCCACUUCCACACACUCACAUAACC .(((((((.......))))))).......(((((((((....(((((...))))).(....).......)))))))))............................. (-21.15 = -21.82 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:47 2011