| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,140,732 – 16,140,825 |
| Length | 93 |
| Max. P | 0.897257 |
| Location | 16,140,732 – 16,140,825 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 93.55 |
| Shannon entropy | 0.08887 |
| G+C content | 0.51254 |
| Mean single sequence MFE | -24.87 |
| Consensus MFE | -20.79 |
| Energy contribution | -21.90 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.897257 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16140732 93 - 21146708 CACCGACCACCAUUCCCAGCAAUUUCAAUUUGAUAUCGCUACUUCCACCACGACUUGGCAACAAGUUGGUCCACUGUCAUCUCGAGUGGUUGC ...((((((((......(((.((.((.....)).)).)))..........(((((((....)))))))...............).))))))). ( -24.30, z-score = -2.54, R) >droSec1.super_1 13706775 93 - 14215200 CACCGUCCACCAUUCCCAGCAAUUUCAAUUUAAUAGCGCUAGUUCCACCACGCCUUGGCAACAAGUUGGUCCACUGUCAUCCCGAGUGGUGGU ......(((((((((...((.(((.......))).))(.((((...((((...((((....)))).))))..)))).).....))))))))). ( -26.80, z-score = -3.14, R) >droSim1.chr2R 14799302 93 - 19596830 CACCGUCCACCAUUCCCAGCAAUUUCAAUUUGAUAGCGCUAGUUCCACCACGCCUUGGCAACAAGUUGGUCCACUGUCAUCCCGACUGGUGGU ......((((((.((...((.(((.......))).))(.((((...((((...((((....)))).))))..)))).).....)).)))))). ( -23.50, z-score = -1.35, R) >consensus CACCGUCCACCAUUCCCAGCAAUUUCAAUUUGAUAGCGCUAGUUCCACCACGCCUUGGCAACAAGUUGGUCCACUGUCAUCCCGAGUGGUGGU ......(((((((((...((.(((.......))).))(.((((...((((...((((....)))).))))..)))).).....))))))))). (-20.79 = -21.90 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:37:54 2011