| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,116,169 – 16,116,232 |
| Length | 63 |
| Max. P | 0.963937 |
| Location | 16,116,169 – 16,116,232 |
|---|---|
| Length | 63 |
| Sequences | 9 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 91.19 |
| Shannon entropy | 0.16754 |
| G+C content | 0.27822 |
| Mean single sequence MFE | -14.79 |
| Consensus MFE | -12.69 |
| Energy contribution | -12.59 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.963937 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 16116169 63 - 21146708 ------------CAAUUAUUUGUAAAAUAUUUAUUUUGCAAUUGAAUUGAAAAAG-UUUCUGCCUGUGGCAGUUGC ------------(((((..(((((((((....)))))))))...))))).....(-(..(((((...)))))..)) ( -17.00, z-score = -3.11, R) >droVir3.scaffold_12875 17243541 64 + 20611582 ------------CAAUUAUUUGUAAAAUAUUUAUAUUACAAUUGAAUUGAAAAAGUUUUCUGUGUGUGGCACAUCC ------------(((((..((((((.((....)).))))))...)))))...........((((.....))))... ( -9.10, z-score = -0.48, R) >droPer1.super_2 664721 63 + 9036312 ------------CAAUUAUUUGUAAAAUAUUUAUUUUACAAUUGAAUUGAAAAAG-UUUCUGUGUGUGGCAGUUGC ------------(((((..(((((((((....)))))))))...))))).....(-(..((((.....))))..)) ( -13.20, z-score = -2.32, R) >dp4.chr3 13253388 63 - 19779522 ------------CAAUUAUUUGUAAAAUAUUUAUUUUACAAUUGAAUUGAAAAAG-UUUCUGUGUGUGGCAGUUGC ------------(((((..(((((((((....)))))))))...))))).....(-(..((((.....))))..)) ( -13.20, z-score = -2.32, R) >droAna3.scaffold_13266 10657900 75 + 19884421 AGGGCCCUCCUGCAAUUAUUUGUAAAAUAUUUAUUUUACAAUUGAAUUGAAAAAG-UUUCUGGUUGUGGCAGUUGC ...((((.((..(((((..(((((((((....)))))))))...)))))......-.....))..).)))...... ( -14.32, z-score = -0.46, R) >droEre2.scaffold_4845 10266417 63 - 22589142 ------------CAAUUAUUUGUAAAAUAUUUAUUUUGCAAUUGAAUUGAAAAAG-UUUCUGCCUGUGGCAGUUGC ------------(((((..(((((((((....)))))))))...))))).....(-(..(((((...)))))..)) ( -17.00, z-score = -3.11, R) >droYak2.chr2R 8051410 63 + 21139217 ------------CAAUUAUUUGUAAAAUAUUUAUUUUGCAAUUGAAUUGAAAAAG-UUUCUGCCUGUGGCAGUUGC ------------(((((..(((((((((....)))))))))...))))).....(-(..(((((...)))))..)) ( -17.00, z-score = -3.11, R) >droSec1.super_1 13681002 63 - 14215200 ------------CAAUUAUUUGUAAAAUAUUUAUUUUGCAAUUGAAUUGAAAAAG-UUUCUGCCUGUGGCAGUUUC ------------(((((..(((((((((....)))))))))...)))))......-...(((((...))))).... ( -15.30, z-score = -3.10, R) >droSim1.chr2R 14774486 63 - 19596830 ------------CAAUUAUUUGUAAAAUAUUUAUUUUGCAAUUGAAUUGAAAAAG-UUUCUGCCUGUGGCAGUUGC ------------(((((..(((((((((....)))))))))...))))).....(-(..(((((...)))))..)) ( -17.00, z-score = -3.11, R) >consensus ____________CAAUUAUUUGUAAAAUAUUUAUUUUGCAAUUGAAUUGAAAAAG_UUUCUGCCUGUGGCAGUUGC ............(((((..(((((((((....)))))))))...)))))..........((((.....)))).... (-12.69 = -12.59 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:37:42 2011