| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,113,160 – 16,113,258 |
| Length | 98 |
| Max. P | 0.751588 |
| Location | 16,113,160 – 16,113,258 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 68.72 |
| Shannon entropy | 0.61981 |
| G+C content | 0.47459 |
| Mean single sequence MFE | -28.07 |
| Consensus MFE | -18.23 |
| Energy contribution | -17.87 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.65 |
| Mean z-score | -0.41 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751588 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16113160 98 - 21146708 ---UUCCCAAUGGUGCAGCAGGUCAUG---ACUGACAUUUCGUGACAGGAUGUUGGUCCUUGGACAUCCUGUGGGCGGCCCCAAUAGGACAUGCGACAUUUAAU ---...((((.((..(((((.((((((---(........)))))))....)))))..))))))...(((((((((....))).))))))............... ( -30.70, z-score = -0.25, R) >droSim1.chr2R 14771493 98 - 19596830 ---UUCCCAAUGGUGCAGCAGGUCACG---ACUGACAUUUCGUGACAGGAUGUUGGUCCUUGGACAUCCUGUGGGCGGCCCCAAUAGGACAUGCGACAUUUAAU ---...((((.((..(((((.((((((---(........)))))))....)))))..))))))...(((((((((....))).))))))............... ( -32.50, z-score = -0.84, R) >droSec1.super_1 13673238 98 - 14215200 ---UUCCCAAUGGUGCAGCAGGUCACG---ACUGACAUUUCGUGACAGGAUGUUGGUCCUUGGACAUCCUGUGGGCGGCCCCAAUAGGACAUGCGACAUUUAAU ---...((((.((..(((((.((((((---(........)))))))....)))))..))))))...(((((((((....))).))))))............... ( -32.50, z-score = -0.84, R) >droYak2.chr2R 8048315 98 + 21139217 ---UUCCCAAUGGUGCAGCUGGUCACG---AGUGACAUUUCGUGACAGGAUGUUGGUCCUUGGACAUCCUGUGGGUGGCCCCAAUAGGACAUGCGACAUUUAAU ---.(((...(((.((.(((.((((((---((......))))))))((((((((.(....).))))))))...))).)).)))...)))............... ( -33.60, z-score = -0.93, R) >droEre2.scaffold_4845 10263326 98 - 22589142 ---UUCCCAAUGGUGCAGCAGGUCACG---ACUGACAUUUCGUGACAGGAUGUUGGUCCUUGGACAUCCUGUGGGUGGCCCCAAUAGGACAUGCGACAUUUAAU ---...((((.((..(((((.((((((---(........)))))))....)))))..))))))...(((((((((....))).))))))............... ( -32.80, z-score = -0.85, R) >droAna3.scaffold_13266 10654946 89 + 19884421 ---UUCCCAAUGGUGCAGCUGGUCACGCGUCCUGCCAUCCUGUGACAGG----CACAGCUCGGUUA--CUGAAGAAGCUUUUUAAAA-----GUAAAAUUUAA- ---..((.....((((.....((((((.(.........).))))))..)----))).....))(((--((.((((....))))...)-----)))).......- ( -15.70, z-score = 1.76, R) >droMoj3.scaffold_6496 21770027 100 - 26866924 UUUCAUGCACUGCCACAGUAAUGAAUGCAAUUCAAUUAAUUUCACCAAAUUGUUGAAACUAUAAUA-AGUGGAUUAAAUUGUCGUAGUUAAUGGAAAUGUU--- ((((((..(((((.(((((..(((((...))))).((((((.(((...(((((.......))))).-.)))))))))))))).)))))..)))))).....--- ( -18.70, z-score = -0.89, R) >consensus ___UUCCCAAUGGUGCAGCAGGUCACG___ACUGACAUUUCGUGACAGGAUGUUGGUCCUUGGACAUCCUGUGGGCGGCCCCAAUAGGACAUGCGACAUUUAAU ...........((((..(((.(((.....................(((((((((........)))))))))((((....))))....))).)))..)))).... (-18.23 = -17.87 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:37:41 2011