| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,106,720 – 16,106,816 |
| Length | 96 |
| Max. P | 0.579763 |
| Location | 16,106,720 – 16,106,816 |
|---|---|
| Length | 96 |
| Sequences | 11 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 97.46 |
| Shannon entropy | 0.05916 |
| G+C content | 0.33714 |
| Mean single sequence MFE | -18.86 |
| Consensus MFE | -17.85 |
| Energy contribution | -18.29 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.579763 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16106720 96 + 21146708 GAAAUCAGGAAGUGUAUUAUAUAAUUUUAUAGAUACUAAACUCAACUUUGACACAAAUCGGCUGAGUGCGGUCUGUAAACAUGACAUUUGCUGUAC .....(((.((((((..........(((((((((.....(((((...((((......)))).)))))...)))))))))....)))))).)))... ( -19.54, z-score = -1.21, R) >droSim1.chr2R 14765368 96 + 19596830 GAAAUCAGGAAGUGUAUUAUAUAAUUUUAUAGAUACUAAACUCAACUUUGACACAAAUCGGCUGAGUGCGGUCUGUAAACAUGACAUUUGCUGUAC .....(((.((((((..........(((((((((.....(((((...((((......)))).)))))...)))))))))....)))))).)))... ( -19.54, z-score = -1.21, R) >droSec1.super_1 13667241 96 + 14215200 GAAAUCAGGAAGUGUAUUAUAUAAUUUUAUAGAUACUAAACUCAACUUUGACACAAAUCGGCUGAGUGCGGUCUGUAAACAUGACAUUUGCUGUAC .....(((.((((((..........(((((((((.....(((((...((((......)))).)))))...)))))))))....)))))).)))... ( -19.54, z-score = -1.21, R) >droYak2.chr2R 8041947 96 - 21139217 GAAAUCAGGAAGUGUAUUAUAUAAUUUUAUAGAUACUAAACUCAACUUUGACACAAAUCGGCUGAGUGCGGUCUGUAAACAUGACAUUUGCUGUAC .....(((.((((((..........(((((((((.....(((((...((((......)))).)))))...)))))))))....)))))).)))... ( -19.54, z-score = -1.21, R) >droEre2.scaffold_4845 10256930 96 + 22589142 GAAAUCAGGAAGUGUAUUAUAUAAUUUUAUAGAUACUAAACUCAACUUUGACACAAAUCGGCUGAGUGCGGUCUGUAAACAUGACAUUUGCUGUAC .....(((.((((((..........(((((((((.....(((((...((((......)))).)))))...)))))))))....)))))).)))... ( -19.54, z-score = -1.21, R) >droAna3.scaffold_13266 10648922 96 - 19884421 GAAAUCAGGAAGUGUAUUAUAUAAUUUUAUAGAUACUAAACUCAACUUUGACACAAAUCGGCUGAGUGCGGUCUGUAAACAUGACAUUUGCUGUAC .....(((.((((((..........(((((((((.....(((((...((((......)))).)))))...)))))))))....)))))).)))... ( -19.54, z-score = -1.21, R) >dp4.chr3 13244202 96 + 19779522 GAAAUCAGGAAGUGUAUUAUAUAAUUUUAUAGAUACUAAACUCAACUUUGACACAAAUCGGCUGAGUGCGGUCUGUAAACAUGACAUUUGCUGUAC .....(((.((((((..........(((((((((.....(((((...((((......)))).)))))...)))))))))....)))))).)))... ( -19.54, z-score = -1.21, R) >droPer1.super_2 655572 96 - 9036312 GAAAUCAGGAAGUGUAUUAUAUAAUUUUAUAGAUACUAAACUCAACUUUGACACAAAUCGGCUGAGUGCGGUCUGUAAACAUGACAUUUGCUGUAC .....(((.((((((..........(((((((((.....(((((...((((......)))).)))))...)))))))))....)))))).)))... ( -19.54, z-score = -1.21, R) >droVir3.scaffold_12875 17230352 86 - 20611582 GAAAUCAGGAAGUGUAUUAUAUAAUUUUAUAGAUACUAAACUCAACUUUGACACAAAUCGACUG----------GUAAACAUGACAUUUGCUGUAC .....(((.((((((.(((((......)))))............(((((((......))))..)----------)).......)))))).)))... ( -10.50, z-score = 0.26, R) >droMoj3.scaffold_6496 21758138 96 + 26866924 GAAAUCAGGAAGUGUAUUAUAUAAUUUUAUAGAUACUAAACUCAACUUUGACACAAAUCGACUGAGUGCGGUCUGUAAACAUGACAUUUGCUGUAC .....(((.((((((..........(((((((((.....(((((...((((......)))).)))))...)))))))))....)))))).)))... ( -20.34, z-score = -1.67, R) >droGri2.scaffold_15112 2767458 96 + 5172618 AAAAUCAGGAAGUGUAUUAUAUAAUUUUAUAGAUACUAAACUCAACUUUGACACAAAUCGACUGAGUGCGGUCUGUAAACAUGACAUUUGCUGUAC .....(((.((((((..........(((((((((.....(((((...((((......)))).)))))...)))))))))....)))))).)))... ( -20.34, z-score = -1.77, R) >consensus GAAAUCAGGAAGUGUAUUAUAUAAUUUUAUAGAUACUAAACUCAACUUUGACACAAAUCGGCUGAGUGCGGUCUGUAAACAUGACAUUUGCUGUAC .....(((.((((((..........(((((((((.....(((((...((((......)))).)))))...)))))))))....)))))).)))... (-17.85 = -18.29 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:37:39 2011