| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,073,589 – 16,073,698 |
| Length | 109 |
| Max. P | 0.544144 |
| Location | 16,073,589 – 16,073,698 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 60.09 |
| Shannon entropy | 0.63027 |
| G+C content | 0.35812 |
| Mean single sequence MFE | -20.53 |
| Consensus MFE | -7.51 |
| Energy contribution | -7.70 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.544144 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16073589 109 + 21146708 GGUUAUAUAUUAAAAUCAAU-AAUCUAGUCACAAACUUCGAGGU----UUGUUUCCAAGGAAUUCUAAUAAAAUGCAUUACAUGCUCAUAAAUGUAUUAGAAUUCUGUUCCACA------- ((((((............))-)))).....(((((((....)))----))))......((((((((((((....((((...)))).........))))))))))))........------- ( -19.72, z-score = -2.23, R) >droEre2.scaffold_4845 10224238 105 + 22589142 ----GGUUAUUUAAACCAAUCAAUCUGGUCACGAAAUUCUGAAUGCGCCAGCUUCCUAGGAAUGCCAAUAAAUUGCAUUCCAAGCUCAUAAGUGCAAUAGGCUUCUUCA------------ ----((((.....)))).........((((.((......))..(((((.(((((....(((((((.........)))))))))))).....)))))...))))......------------ ( -21.60, z-score = -0.69, R) >droYak2.chr2R 8007587 90 - 21139217 ----GUUUAUUUAUAUCACCCUAUCUGGUCACAAAAUUCGG---------------UAGGAAUGCAAAUAAAAUGCAUUCCAAGCUCAUCAAAGUAUUGGGCUUCUACA------------ ----.............(((......)))...........(---------------((((((((((.......))))))))(((((((.........))))))).))).------------ ( -20.10, z-score = -2.84, R) >droSim1.chr2R 14731429 107 + 19596830 --------------GGUUAUCAAUCUGGUCACAAACUUCGAGAUGAGCCAGUUUUCCAGGAAUGCGAAUCAAAUGCAUUACACGCUCAUAAAUGUAUUAGAAUUUUGUGCAAUUGACCGCA --------------.((..(((((...(.((((((.(((..(((..((..((((.....))))))..))).((((((((...........)))))))).))).))))))).)))))..)). ( -20.70, z-score = 0.33, R) >consensus ____GUUUAUUUAAAUCAAUCAAUCUGGUCACAAAAUUCGAGAU____CAGUUUCCUAGGAAUGCAAAUAAAAUGCAUUACAAGCUCAUAAAUGUAUUAGAAUUCUGCA____________ .......................((((((.............................(((((((.........)))))))..((........)))))))).................... ( -7.51 = -7.70 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:37:27 2011