| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,051,060 – 16,051,159 |
| Length | 99 |
| Max. P | 0.541287 |
| Location | 16,051,060 – 16,051,159 |
|---|---|
| Length | 99 |
| Sequences | 7 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 75.88 |
| Shannon entropy | 0.46753 |
| G+C content | 0.55093 |
| Mean single sequence MFE | -33.27 |
| Consensus MFE | -19.62 |
| Energy contribution | -20.16 |
| Covariance contribution | 0.54 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541287 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16051060 99 + 21146708 GCUGUCCGUUUCUGUUUUUCAUGGCUUGAGACGUGGAACUCGAAGCUUGGACAGCGGGCACGCCCGGGGGC---AAGUCAACGAACCC-AAAUGGAGCGUAAC--- ((((((((((((.(..(((((((........)))))))..))))))..)))))))....(((((((.(((.---..(....)...)))-...))).))))...--- ( -37.50, z-score = -1.72, R) >droAna3.scaffold_13266 10595765 95 - 19884421 --UGUCCGCAUGUCCGUUU----GCCCAGGGC-CAGGUCUUGAAACUUGGACAGCGGACACGCCCGGGGCC---AAGUCAACGAACCC-AAAUGGAGCGUAACUAU --.((((((.((((((...----...((((((-...)))))).....))))))))))))(((((((((..(---........)..)))-....)).))))...... ( -36.10, z-score = -1.73, R) >droEre2.scaffold_4845 10200688 97 + 22589142 --UGUCCGUUUCUGUUUUUCAUGGCUUGAGACGUGGAGCUCGAAGCUUGGACAGCGGGCACGCCCGGGGGC---AAGCCAACGAACCC-AAAUGGAGCGUAAC--- --.(((((...((((((.....((((((((.(.....)))).))))).)))))))))))(((((((.(((.---..(....)...)))-...))).))))...--- ( -32.60, z-score = -0.16, R) >droYak2.chr2R 7984552 99 - 21139217 GCUGUCCGUUUCGGUUUUUCAUGGCUUGAGACGUGAAAGUCGAAGCUUGGACAGCGGGCACGCCCGGGGGC---AAGUCAACGAACCC-AAAUGGAGCGUAAC--- (((((((((((((..(((.((((........)))))))..))))))..)))))))....(((((((.(((.---..(....)...)))-...))).))))...--- ( -40.90, z-score = -2.71, R) >droSec1.super_1 13612468 97 + 14215200 --UGUCCGUUUCUGUUUUUCAUGGCUUGAGACGUGGAACUCGAAGCUUGGACAGCGGGCACGCCCGGGGGC---AAGUCAACGAACCC-AAAUGGAGCGUAAC--- --.(((((...((((((.....((((((((........))).))))).)))))))))))(((((((.(((.---..(....)...)))-...))).))))...--- ( -32.70, z-score = -0.67, R) >droSim1.chr2R 14703789 97 + 19596830 --UGUCCGUUUCUGUUUUUCAUGGCUUGAGACGUGGAACUCGAAGCUUGGACAGCGGGCACGCCCGGGGGC---AAGUCAACGAACCC-AAAUGGAGCGUAAC--- --.(((((...((((((.....((((((((........))).))))).)))))))))))(((((((.(((.---..(....)...)))-...))).))))...--- ( -32.70, z-score = -0.67, R) >droWil1.scaffold_180701 2485720 90 + 3904529 ----------AGAAUACUUC---GAAAGGGUCAUCCGGUCUUUGGAUAGAGCCAUUGGCACGCCCAAAAGUCCAAAGUCAACGAACUUGAAAUGGUGUGUAAC--- ----------..........---....((.(((((((.....))))).)).))....(((((((...((((.(.........).)))).....)))))))...--- ( -20.40, z-score = -0.11, R) >consensus __UGUCCGUUUCUGUUUUUCAUGGCUUGAGACGUGGAACUCGAAGCUUGGACAGCGGGCACGCCCGGGGGC___AAGUCAACGAACCC_AAAUGGAGCGUAAC___ ...((((((...(((((.....((((((((........))))).))).)))))))))))(((((((.(((...............)))....))).))))...... (-19.62 = -20.16 + 0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:37:22 2011