| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,980,177 – 15,980,268 |
| Length | 91 |
| Max. P | 0.690234 |
| Location | 15,980,177 – 15,980,268 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 78.04 |
| Shannon entropy | 0.41770 |
| G+C content | 0.43604 |
| Mean single sequence MFE | -20.16 |
| Consensus MFE | -12.94 |
| Energy contribution | -14.27 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.690234 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15980177 91 - 21146708 UGUUUGCCGACGUUUUUGUUUCGUGGGAGUUUCCCUUAAGCCCGCCCACCAAUUUACGUGUUAAAACACGGCCAUACAUUUAACAACAACA (((..((((((((..(((....(((((.((((.....))))...))))))))...))))((....)).))))...)))............. ( -19.00, z-score = -0.65, R) >droSim1.chr2R 14627836 83 - 19596830 -------GUUUGUUUUUGUUUCGUGGGUGUUUCCCUUAAGCCCGCCCACCAAUUUACGUGUUAAAACACGGCCAUACA-UUAACAACAACA -------..(((((..(((...(((((((.............))))))).......(((((....))))).....)))-..)))))..... ( -20.52, z-score = -1.93, R) >droSec1.super_1 13455223 83 - 14215200 -------GUUUGUUUUUGUUUCGUGGGUGUUUCCCUUAAGCCCGCCCACCAAUUUACGUGUUAAAACACGGCCAUACA-UUAACAACAACA -------..(((((..(((...(((((((.............))))))).......(((((....))))).....)))-..)))))..... ( -20.52, z-score = -1.93, R) >droYak2.chr2R 7910992 90 + 21139217 UGUUUGGCCACGUUUUUGUUUCGUGGGCGUUGCCCUUAAGCCCGCCCACCAAUUUACGUGUUAAAACACGGCCAUACA-UUAACAACAGCA (((.(((((..((..(((....(((((((..((......)).))))))))))...))((((....))))))))).)))-............ ( -30.40, z-score = -2.98, R) >droEre2.scaffold_4845 10128142 90 - 22589142 UGUUUGUCCGCGUUUGUGUUUCGUGGGAGUUUCCCUUAAGCCCGCCCACCAAUUUACGUGUUAAAACACGGCCAUACA-UUAACAACAACA ...........(((.((((...(((((.((((.....))))...))))).......(((((....))))).....)))-).)))....... ( -18.50, z-score = -0.02, R) >droAna3.scaffold_13266 10524035 70 + 19884421 ------------UUGUUUUUGCGUGGGAGUUCCCAUUAAGCCCACCCACCAGUUUGUAAAUAAAAA-ACAAUCCAAU--GCAACA------ ------------......(((((((((..(.......)..)))))......((((.........))-))........--))))..------ ( -12.00, z-score = -0.59, R) >consensus _______CCACGUUUUUGUUUCGUGGGAGUUUCCCUUAAGCCCGCCCACCAAUUUACGUGUUAAAACACGGCCAUACA_UUAACAACAACA ...........(((.(((((..(((((.((((.....))))...))))).......(((((....)))))...........))))).))). (-12.94 = -14.27 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:37:16 2011