Locus 4853

Sequence ID dm3.chr2R
Location 15,974,188 – 15,974,289
Length 101
Max. P 0.751643
window6667

overview

Window 7

Location 15,974,188 – 15,974,289
Length 101
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 79.02
Shannon entropy 0.29216
G+C content 0.29922
Mean single sequence MFE -18.17
Consensus MFE -13.53
Energy contribution -13.53
Covariance contribution 0.01
Combinations/Pair 1.13
Mean z-score -1.68
Structure conservation index 0.74
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.58
SVM RNA-class probability 0.751643
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 15974188 101 - 21146708
CCAUUGCAGUUUGCUGGAAAAGUUUACGAUGAUCCUUUGUAUUAAUUAUUAUUC-GUUAUUAUUUCUCGAGGUAUUUAUUUGAAUACUUUGUGCAGAUUUCU
.....(.(((((((.(((((.....((((((((..((......))..)))).))-)).....)))))((((((((((....)))))))))).))))))).). ( -18.60, z-score =  -1.20, R)
>droSim1.chr2R 14620007 102 - 19596830
CCAUUGCACUUUGCUGGAAAAGUUUACAAGAAUCCCUUGUAUUAAUUAUUAUUCGGUUAAUAUUUCUCGAGGUAUUUAUUUGAAUACUUUGUGCAGAUUUCU
...((((((...((((((.((...((((((.....)))))).......)).))))))...........(((((((((....)))))))))))))))...... ( -22.00, z-score =  -2.24, R)
>droYak2.chr2R 7904943 91 + 21139217
CCAUUGUAGUUUGCUUACCGGGUUUUCAAUUUUCUCUUGUACUAAUUAUUA-----------CAUCUCGAGGUAUUUAUUUAAAUACUUUGUGCAAAUUUCU
.....(.(((((((.......................((((........))-----------))...((((((((((....)))))))))).))))))).). ( -13.90, z-score =  -1.59, R)
>consensus
CCAUUGCAGUUUGCUGGAAAAGUUUACAAUAAUCCCUUGUAUUAAUUAUUAUUC_GUUA_UAUUUCUCGAGGUAUUUAUUUGAAUACUUUGUGCAGAUUUCU
.....(.(((((((..........(((((.......)))))..........................((((((((((....)))))))))).))))))).). (-13.53 = -13.53 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:37:14 2011