| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,391,263 – 3,391,313 |
| Length | 50 |
| Max. P | 0.963194 |
| Location | 3,391,263 – 3,391,313 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 82.54 |
| Shannon entropy | 0.30264 |
| G+C content | 0.44400 |
| Mean single sequence MFE | -14.96 |
| Consensus MFE | -10.16 |
| Energy contribution | -11.00 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.963194 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3391263 50 + 23011544 GAAUAUUU-GCUGUACCGGAUAUCCGGUUUUUCAGCAUGUGACGGAAGUUG .......(-((((.(((((....)))))....)))))...(((....))). ( -18.60, z-score = -4.03, R) >droAna3.scaffold_12916 2852672 50 - 16180835 AAAUAUUU-GUUGCACCGGAUAUCCGCUUUUUCAGCAUGUGACGGAAGUGU .....(((-((..((..((....))(((.....))).))..)))))..... ( -11.50, z-score = -1.03, R) >droSim1.chr2L 3329736 50 + 22036055 GAAUAUUU-GCUGUACCGGAUAUCCGGUUUUCCAGCAUGUGACGGAAGUUG .......(-((((.(((((....)))))....)))))...(((....))). ( -17.90, z-score = -3.52, R) >droSec1.super_5 1538029 50 + 5866729 GAAUGUUU-GCUGUACCGGAUAUCCGGUUUUCCAGCAUGUGACGGAAGUUG .......(-((((.(((((....)))))....)))))...(((....))). ( -17.90, z-score = -3.28, R) >droGri2.scaffold_15252 5736231 50 + 17193109 GAAUAUUUUGUUGCCACGGAUAUCCGCUCUAUGAGGA-AAAACGGAUGUUG ..................((((((((.(((....)))-....)))))))). ( -8.90, z-score = -0.53, R) >consensus GAAUAUUU_GCUGUACCGGAUAUCCGGUUUUUCAGCAUGUGACGGAAGUUG .........((((.(((((....)))))....))))....(((....))). (-10.16 = -11.00 + 0.84)
| Location | 3,391,263 – 3,391,313 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 82.54 |
| Shannon entropy | 0.30264 |
| G+C content | 0.44400 |
| Mean single sequence MFE | -12.70 |
| Consensus MFE | -6.58 |
| Energy contribution | -7.54 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.92 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.940820 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3391263 50 - 23011544 CAACUUCCGUCACAUGCUGAAAAACCGGAUAUCCGGUACAGC-AAAUAUUC ..............(((((....(((((....))))).))))-)....... ( -14.00, z-score = -3.90, R) >droAna3.scaffold_12916 2852672 50 + 16180835 ACACUUCCGUCACAUGCUGAAAAAGCGGAUAUCCGGUGCAAC-AAAUAUUU ........(.(((..(((.....)))((....)).))))...-........ ( -7.80, z-score = -0.43, R) >droSim1.chr2L 3329736 50 - 22036055 CAACUUCCGUCACAUGCUGGAAAACCGGAUAUCCGGUACAGC-AAAUAUUC ..............(((((....(((((....))))).))))-)....... ( -15.10, z-score = -3.70, R) >droSec1.super_5 1538029 50 - 5866729 CAACUUCCGUCACAUGCUGGAAAACCGGAUAUCCGGUACAGC-AAACAUUC ..............(((((....(((((....))))).))))-)....... ( -15.10, z-score = -3.66, R) >droGri2.scaffold_15252 5736231 50 - 17193109 CAACAUCCGUUUU-UCCUCAUAGAGCGGAUAUCCGUGGCAACAAAAUAUUC ....(((((((((-.......))))))))).....((....))........ ( -11.50, z-score = -2.88, R) >consensus CAACUUCCGUCACAUGCUGAAAAACCGGAUAUCCGGUACAGC_AAAUAUUC ...............((((....(((((....))))).))))......... ( -6.58 = -7.54 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:44 2011