| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,942,985 – 15,943,044 |
| Length | 59 |
| Max. P | 0.957314 |
| Location | 15,942,985 – 15,943,044 |
|---|---|
| Length | 59 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 77.93 |
| Shannon entropy | 0.37846 |
| G+C content | 0.31798 |
| Mean single sequence MFE | -11.78 |
| Consensus MFE | -8.68 |
| Energy contribution | -9.32 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.957314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15942985 59 + 21146708 UAAAAAGCAUUAGCU-------GUGUUGUUGAUAUCUAAAUUGAUAUUAGAGAUACUUGACAAACA .....(((....)))-------(((((.((((((((......)))))))).))))).......... ( -12.70, z-score = -2.54, R) >droEre2.scaffold_4845 10094204 66 + 22589142 UAUAAAUCAUCAGCCACUGUCCGUGUUGUUAGCAUCUUAAUAGACAUUACAGAUACUGGCCCGCCA ............((((.((((.(((.((((............)))).))).)))).))))...... ( -13.40, z-score = -1.59, R) >droYak2.chr2R 7875289 66 - 21139217 UAUAAAUCAUUAGCCACAUUGCGUGUUGUUAAUGUCUUAAUAGAUAUUACAGAUACUUGACUCCCA ......(((...((......))(((((..((((((((....))))))))..))))).)))...... ( -11.60, z-score = -1.78, R) >droSec1.super_1 13420747 59 + 14215200 UAUAAAUCAUUAGCC-------AUGUUGUUGAUAUCUUAAUAGAUAUCAGAGAUACUUGACCAACA ...............-------.((((.(((((((((....))))))))).))))........... ( -10.60, z-score = -1.94, R) >droSim1.chr2R 14591379 59 + 19596830 UAUAUAUCAUUAGCC-------AUGUUGUUGAUAUCUUAAUAGAUAUCAGAGAUACUUGACCAACA ...............-------.((((.(((((((((....))))))))).))))........... ( -10.60, z-score = -1.63, R) >consensus UAUAAAUCAUUAGCC_______GUGUUGUUGAUAUCUUAAUAGAUAUUAGAGAUACUUGACCAACA ......................(((((.(((((((((....))))))))).))))).......... ( -8.68 = -9.32 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:37:08 2011