| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,939,689 – 15,939,781 |
| Length | 92 |
| Max. P | 0.638946 |
| Location | 15,939,689 – 15,939,781 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 56.66 |
| Shannon entropy | 0.90631 |
| G+C content | 0.56030 |
| Mean single sequence MFE | -22.27 |
| Consensus MFE | -6.77 |
| Energy contribution | -7.10 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.638946 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15939689 92 - 21146708 CCGCAGCGCUGCCCCUCCCUCAGAUCGA-----CCAUCCCAUCCCAUUGCAUCCCGUCAUAAUUUGCUGUGACUAACUGCGC----UUUGUGCGCAUGCAG----- ..(((((((.((..........(((.(.-----.....).))).....(((....((((((......))))))....)))))----.....)))).)))..----- ( -20.20, z-score = -1.16, R) >droSim1.chr2R 14588094 92 - 19596830 CCGCAGCGCUGCCCCUCCCUCAGAUCGA-----CCAUCCCAUCCCAUUGCAUCCCGUCAUAAUUUGCUGUGACUAACUGCGC----UUUGUGCGCGUGCAG----- ..(((((((.((..........(((.(.-----.....).))).....(((....((((((......))))))....)))))----.....)))).)))..----- ( -20.20, z-score = -0.91, R) >droSec1.super_1 13417479 91 - 14215200 CCGCA-CGCUGCCCCUCCCUCAGAUCGA-----CAAUCCCAUCCCAUUGCAUCCCGUCAUAAUUUGCUGUGACUAACUGCGC----UUUGUGCGCGUGCAG----- ..(((-(((...................-----...............(((....((((((......))))))....)))((----.....))))))))..----- ( -22.60, z-score = -2.34, R) >droYak2.chr2R 7868569 88 + 21139217 ---------UGCCCCUCCCUCAGAUCGAGAAUGCCACGCCAGCCCAUUGCAUCCCGUCAUAAUUUGCUGUGACUAACUGCGC----UUUGUGCGCGUGCAG----- ---------.........(((.....)))..(((.((((..((.((.((((....((((((......))))))....)))).----..)).))))))))).----- ( -21.10, z-score = -0.80, R) >droEre2.scaffold_4845 10090872 83 - 22589142 ---------UGCCCCUCCCUCGGAUCGA-----GCAUCCCAUCCCAGUGCAUCCCGUCAUAAUUUGCUGUGACUAACUGCGC----UUUGUGCGCGUGCAG----- ---------.........((.((((.(.-----.....).)))).))(((((...((((((......)))))).....((((----.....))))))))).----- ( -21.50, z-score = -1.40, R) >droAna3.scaffold_13266 10485896 88 + 19884421 ---------CCCUCACCCUCGCAGCCUUCUAGCCGACUUCCCUUUCCCUUUAGGCCUCGUAAUUUGCUGUGACUAACUGCGC----UUUGUGCGCGUGCAG----- ---------..(((((..(((((((........(((....(((........)))..)))......)))))))......((((----.....))))))).))----- ( -20.94, z-score = -1.75, R) >dp4.chr3 13067021 93 - 19779522 CUGCCACUGCAACUGCCACUCCAUUCCA-----CUGCCCUGCCCGACCCAUGCCUGUCAUAAUUUGCUGUGACUAAAUGCGC----UUUGUGCGCGUGCAGA---- (((((((.((((................-----..((...))..(((........))).....)))).))).....((((((----.....)))))))))).---- ( -21.40, z-score = -1.08, R) >droPer1.super_2 485252 93 + 9036312 CUGCCACUGCAACUGCCACUCCAUUCCA-----CUGCCCUGCCCGACCCAUGCCUGUCAUAAUUUGCUGUGACUAAAUGCGC----UUUGUGCGCGUGCAGA---- (((((((.((((................-----..((...))..(((........))).....)))).))).....((((((----.....)))))))))).---- ( -21.40, z-score = -1.08, R) >droMoj3.scaffold_6496 21493661 69 - 26866924 ------------------UUGC-GCUCGUUGCCUAGCUGCCGUUGCACUCAUCCCGUCAUAAUUCAGUGUGACUAAAGGCGC-GUGCAG----------------- ------------------....-((.(((.((((.((.......)).........((((((......))))))...))))))-).))..----------------- ( -19.80, z-score = -0.68, R) >droGri2.scaffold_15112 2549364 95 - 5172618 ---UUUCAGCUGCAAUCCCUGU-UCUGCUUGAGCAACAGAU-UUGCCCUCUUCCUGUCAUAAUUUGCUGUGACUAAAGGUGC-GCAUUUGUGCGCGUGCAA----- ---.....(((((......(((-((.....)))))((((((-.((((((......((((((......))))))...))).))-).))))))..))).))..----- ( -26.30, z-score = -1.11, R) >droWil1.scaffold_180701 2289480 98 - 3904529 --------CCUGAGCCUGCUGUUGGCGUUGUCCAGAGCUCUGGCUCUAGCUCUCUCUUAUAAUUCGCUGUGACUAACUGGGCUUUGUCCGCGCGUGCACAGAGCGC --------.....(((((.(((..((((.(..(((((((((((.((((((...............)))).)))))...))))))))..)))))..)))))).)).. ( -29.56, z-score = 0.73, R) >consensus ______C__CGCCCCUCCCUCAGAUCGA_____CCACCCCAUCCCAUCGCAUCCCGUCAUAAUUUGCUGUGACUAACUGCGC____UUUGUGCGCGUGCAG_____ .......................................................((((((......)))))).....((((.........))))........... ( -6.77 = -7.10 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:37:07 2011