| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,936,140 – 15,936,235 |
| Length | 95 |
| Max. P | 0.762493 |
| Location | 15,936,140 – 15,936,235 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 83.13 |
| Shannon entropy | 0.32747 |
| G+C content | 0.37755 |
| Mean single sequence MFE | -24.65 |
| Consensus MFE | -12.93 |
| Energy contribution | -13.05 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.762493 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15936140 95 - 21146708 ----AUUUCCGCGCCGAAACAGAAACACAUGUCACAGAUUUGUUUCU------GUUUCGGAAGCACUUAAGCACUCAGCAAAUUUGUUUGAAAAAUCUGGAAAUA------ ----((((((((.((((((((((((((...(((...))).)))))))------)))))))..))..(((((((...........))))))).......)))))).------ ( -31.50, z-score = -4.72, R) >droSim1.chr2R 14584574 95 - 19596830 ----AUUUCCGCGCCGAAACAGAAACACAUGUCACAGAUUUGUUUCU------GUUUCGGAAGCACUUAAGCACUCAGCAAAUUUGUUUGAAAAAUCUGGAAAUA------ ----((((((((.((((((((((((((...(((...))).)))))))------)))))))..))..(((((((...........))))))).......)))))).------ ( -31.50, z-score = -4.72, R) >droSec1.super_1 13413964 95 - 14215200 ----AUUUCCGCGCCGAAACAGAAACACAUGUCACAGAUUUGUUUCU------GUUUCGGAAGCACUUAAGCACUCAGCAAAUUUGUUUGAAAAAUCUGGAAAUA------ ----((((((((.((((((((((((((...(((...))).)))))))------)))))))..))..(((((((...........))))))).......)))))).------ ( -31.50, z-score = -4.72, R) >droYak2.chr2R 7864979 95 + 21139217 ----AUUUCCGCGCCGAAACAGAAACACAUGUCACAGAUUUGUUUCU------GUUUCGGAAGCACUUAAGCACUCAGCAAAUUUGUUUGAAAAAUCUGGAAAUG------ ----((((((((.((((((((((((((...(((...))).)))))))------)))))))..))..(((((((...........))))))).......)))))).------ ( -31.50, z-score = -4.52, R) >droEre2.scaffold_4845 10087339 95 - 22589142 ----AUUUCCGCGCCGAAACAGAAACACAUGUCACAGAUUUGUUUCU------GUUUCGGAAGCACUUAAGCACUCAGCAAAUUUGUUUGAAAAAUCUGGAAAUA------ ----((((((((.((((((((((((((...(((...))).)))))))------)))))))..))..(((((((...........))))))).......)))))).------ ( -31.50, z-score = -4.72, R) >droAna3.scaffold_13266 10482561 105 + 19884421 GCACUCGCUGAAACUGAAACAGAAACACAUGUCACAGAUUUGUUUCU------GCUUCGGAAGCACUUAAGCACUCAGCAAAUUUGUUUGAAAAAUCUGGAACUGAAACCG ......(((((..(((((.((((((((...(((...))).)))))))------).)))))..((......))..)))))......((((.(......).))))........ ( -25.00, z-score = -1.68, R) >dp4.chr3 13063517 95 - 19779522 -----------CGUUGGAACAGAAACACAUGUCACAGAUUUGUUUCUCUUUCUGUUUCGGAAGCACUUAAGCACUCAGCAAAUUUGUUUGAAAAAUCUGGAACUGG----- -----------....((((.(((((((...(((...))).))))))).)))).((((((((.((......))..((((((....)).))))....))))))))...----- ( -19.90, z-score = -0.22, R) >droPer1.super_2 481760 95 + 9036312 -----------CGUUGGAACAGAAACACAUGUCACAGAUUUGUUUCUGUUUCUGUUUCGGAAGCACUUAAGCACUCAGCAAAUUUGUUUGAAAAAUCUGGAACUGG----- -----------....((((((((((((...(((...))).)))))))))))).((((((((.((......))..((((((....)).))))....))))))))...----- ( -25.90, z-score = -1.93, R) >droWil1.scaffold_180701 2270913 91 - 3904529 --------AGUCGCUGAAACAGAAACACAUGUCACAGAUUUGUUUCA------GUUUCGGAAGCACUUAAGCACUCAGCGAAUUUGUUUGAAAAAUCUGGAACUA------ --------..((((((((((.((((((...(((...))).)))))).------)))))....((......))....)))))....((((.(......).))))..------ ( -19.40, z-score = -0.23, R) >droMoj3.scaffold_6496 21486984 84 - 26866924 ----------------AAACUGAAACACAUGUCACAGAUUUGUUUCA------CUUUCGGAAGCACUUAAGCACUCAGCGAAUUUGUUUGAAAAAAAGGAGAAAAA----- ----------------.................(((((((((((((.------......)))))......((.....))))))))))...................----- ( -10.10, z-score = 1.57, R) >droGri2.scaffold_15112 2544948 85 - 5172618 ---------------GAAACUGAAACACAUGUCACAGAUUUGUUUCA------CUUUCGGAAGCACUUAAGCACUCAGCGAAUUUGUUUGAAAAAAAAAAAGAAAA----- ---------------((((.(((((((...(((...))).)))))))------.))))..(((((.....((.....)).....))))).................----- ( -13.40, z-score = 0.07, R) >consensus ________CCGCGCCGAAACAGAAACACAUGUCACAGAUUUGUUUCU______GUUUCGGAAGCACUUAAGCACUCAGCAAAUUUGUUUGAAAAAUCUGGAAAUA______ .............((((((((((((((...(((...))).)))))))......)))))))(((((.....((.....)).....)))))...................... (-12.93 = -13.05 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:37:06 2011