| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,920,263 – 15,920,367 |
| Length | 104 |
| Max. P | 0.877147 |
| Location | 15,920,263 – 15,920,367 |
|---|---|
| Length | 104 |
| Sequences | 7 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 76.42 |
| Shannon entropy | 0.46103 |
| G+C content | 0.43055 |
| Mean single sequence MFE | -27.44 |
| Consensus MFE | -18.75 |
| Energy contribution | -19.47 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.877147 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15920263 104 + 21146708 GAAAUCAGUUCGUCUGCCCAUCUCUUUGUCUAAAUCUUUCGAGAUCUUCU--GGGAUCUCGG----CUAGCUUGAAGCGUGGAAAAUAUCAAUUUACGCGAACUGAGACA ....(((((((((..(((((......))............(((((((...--.)))))))))----)..)).....(((((((.........)))))))))))))).... ( -31.40, z-score = -2.49, R) >droSim1.chr2R 14568866 104 + 19596830 GAAAUCAGUUCGUCUGCCCGUGUCUUUGUCUAAAUCUUUUGGGAUCUUCU--GGGAUCUCGG----CUAGCUUGAAGCGUGGAAAAUAUCAAUUUACGCGAACUGAGACA ....(((((((((..(((((......))............(((((((...--.)))))))))----)..)).....(((((((.........)))))))))))))).... ( -29.50, z-score = -1.61, R) >droSec1.super_1 13398259 104 + 14215200 GAAAUCAGUUCGUCUGCCCGUGUCUUUGUCUAAAUCUUUUGGGAUCUUCU--GGGAUCUCGG----CUAGCUUGAAGCGUGGAAAAUAUCAAUUUACGCGAACUGAGACA ....(((((((((..(((((......))............(((((((...--.)))))))))----)..)).....(((((((.........)))))))))))))).... ( -29.50, z-score = -1.61, R) >droYak2.chr2R 7849129 106 - 21139217 GAAAUCAGUUCGUCUGCCCGUUUCUCUGUCUAAAUCUCUUGGGAUCCUCU--GGGAUCUCGGAU--CUAGCUUGAAGCGUGGAAAAUAUCAAUUUACGCGAACUGAGACA ....(((((((((...((((((((...(.(((.((((...(((((((...--.)))))))))))--.))))..)))))).)).((((....))))..))))))))).... ( -35.40, z-score = -3.24, R) >droEre2.scaffold_4845 10071931 94 + 22589142 GAAAUCAGCUCGUCU----------UUGUCUGAAUCUUUUGGGAUCCUCU--GGGAUCUCGG----CUAGCUUGAAGCGUGGAAAAUAUCAAUUUACGCGAACUGAUGCA ...(((((.((....----------.............(((((((((...--.)))))))))----..........(((((((.........))))))))).)))))... ( -24.60, z-score = -0.88, R) >droAna3.scaffold_13266 10467043 109 - 19884421 GAAAUCAUUGCCUCCGCCCAUCCCAUUGUCUGAGUCACUCAGGAUCCUCUCCACGAGUCUGGAUUGCUAGCUUGAAGCGUGGAAAAUAUCAUUUUACGCGAACUAGAGG- ............................((((((...))))))..(((((...((((.((((....))))))))..((((((((.......)))))))).....)))))- ( -25.10, z-score = 0.03, R) >droWil1.scaffold_180701 2248271 103 + 3904529 GAAAUCAUUGCAUGCUC----AUCUUGAUUUGUUUUUCUUUGUUUUCUUU--UUGGUUUUUAUUU-UGGGCUUGAAGCGUGGAAAAUAUCAAUUUACGCAAGUUCAAAGA (((((((.........(----(....((........))..))........--.)))))))..(((-(((((((...(((((((.........))))))))))))))))). ( -16.57, z-score = 0.58, R) >consensus GAAAUCAGUUCGUCUGCCCGUCUCUUUGUCUAAAUCUUUUGGGAUCCUCU__GGGAUCUCGG____CUAGCUUGAAGCGUGGAAAAUAUCAAUUUACGCGAACUGAGACA ....(((((((...........................(((((((((......)))))))))..............(((((((.........)))))))))))))).... (-18.75 = -19.47 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:37:01 2011