| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,913,677 – 15,913,774 |
| Length | 97 |
| Max. P | 0.542690 |
| Location | 15,913,677 – 15,913,774 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 76.55 |
| Shannon entropy | 0.43868 |
| G+C content | 0.45569 |
| Mean single sequence MFE | -24.09 |
| Consensus MFE | -12.13 |
| Energy contribution | -15.06 |
| Covariance contribution | 2.92 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.542690 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15913677 97 + 21146708 GGAUCACACGAGCAGAAGAAAUUGCCAUCAGCGAUAAGUGCAUUUCACUUGCAGUGGGUUGUUUGGCGCGGCCAUGGUAAGUGAGGAAAAUUUUUCG ..............(((((((((((.....))))).......((((((((((....((((((.....))))))...))))))))))....)))))). ( -26.20, z-score = -0.56, R) >droSim1.chr2R 14562274 97 + 19596830 GGAUCACACGAGCAGAAGAAAUCGCCAUCAGCGAUAAGUGCAUUUCACUUGCAGUGGGUUGUUUGGCGCGGCCAUGGUAAGUGAGGAAAAUUUUUCG ..............(((((((((((.....))))).......((((((((((....((((((.....))))))...))))))))))....)))))). ( -28.30, z-score = -1.20, R) >droSec1.super_1 13391673 97 + 14215200 GUAUCACACGAGCAGAAGAAAUCGCCAUCAGCGAUAAGUGCAUUUCACUUGCAGUGGGUUGUUUGGCGCGGCCAUGGUAAGUGAGGAAAAUUUUUCG ..............(((((((((((.....))))).......((((((((((....((((((.....))))))...))))))))))....)))))). ( -28.30, z-score = -1.38, R) >droYak2.chr2R 7842534 97 - 21139217 AGAUCACACGAGCAAAAGAAAUCGCCAUCAGCGAUAAGUGCAUUUCACUUGCAGUGGGUUGUUUGGCGCGACCAAGGUAAGUGGGAAAAAAUUUCCC ...........(((......(((((.....)))))...))).(..(((((((....((((((.....))))))...)))))))..)........... ( -27.50, z-score = -1.65, R) >droEre2.scaffold_4845 10065577 97 + 22589142 GGAUCACACGAGCAGCAGAAAUCGCCAUCAGCGAUAAGUGCAUUUCACUUGCAGUGGGUUGAUUGGCGCGACCACGGCAAGUGGGCAAAAAAUUCCC (((........((.(((...(((((.....)))))...)))...((((((((.((((.(((.......))))))).)))))))))).......))). ( -30.76, z-score = -1.44, R) >dp4.chr3 13038693 73 + 19779522 GAAUCACACGA---AAAGAAAUUGCCAUCAGCGAUAAGUGAAUUUCACUUGCAGUUUACUCUUUUCCACAACUACG--------------------- .........((---(((((.(((((.....)))))(((((.....))))).........)))))))..........--------------------- ( -13.80, z-score = -2.55, R) >droPer1.super_2 455861 73 - 9036312 GAAUCACACGA---AAAGAAAUUGCCAUCAGCGAUAAGUGAAUUUCACUUGCAGUUUACUCUUUUCCACAACUACG--------------------- .........((---(((((.(((((.....)))))(((((.....))))).........)))))))..........--------------------- ( -13.80, z-score = -2.55, R) >consensus GGAUCACACGAGCAGAAGAAAUCGCCAUCAGCGAUAAGUGCAUUUCACUUGCAGUGGGUUGUUUGGCGCGACCACGGUAAGUGAGGAAAAUUUUUCG ....(((.(........)..(((((.....)))))..)))...(((((((((....((((((.....))))))...)))))))))............ (-12.13 = -15.06 + 2.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:37:00 2011