| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,910,427 – 15,910,522 |
| Length | 95 |
| Max. P | 0.970257 |
| Location | 15,910,427 – 15,910,522 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 84.76 |
| Shannon entropy | 0.24744 |
| G+C content | 0.51284 |
| Mean single sequence MFE | -35.47 |
| Consensus MFE | -18.21 |
| Energy contribution | -18.69 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.17 |
| Mean z-score | -3.44 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.970257 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15910427 95 - 21146708 AAAAAGCGCAUUUGCAUACAGUCGAGGCUGGGAGCUGUGAGCUGGGAUCUUAGCUCUUGGCUCUUGGCUGUGUGCUGACCAAAAAUGGCAGAAGC .....((.((((((((((((((((((((..(((((((.((.......)).)))))))..)).))))))))))))).......)))))))...... ( -43.81, z-score = -4.45, R) >droSim1.chr2R 14559077 81 - 19596830 AAAAAGCGCAUUUGCAUACAGUCGAGGCUGG-------GAGCUGGGAUCUUGGCUCUUGGCU-------GUGUGCUGACCAAAAAUGGCAGAAGC .....((.((((((((((((((((((((..(-------((.......)))..)).)))))))-------)))))).......)))))))...... ( -33.91, z-score = -3.59, R) >droSec1.super_1 13388492 88 - 14215200 AAAAAGCGCAUUUGCAUACAGUCGAGGCUGG-------GAGCUGGGAUCUUGGCUCUUGGCUCUUAGCUGUGUGCUGACCAAAAAUGGCAGAAGC .....((.((((((((((((((..((((..(-------((((..(....)..)))))..)).))..))))))))).......)))))))...... ( -39.51, z-score = -4.27, R) >droYak2.chr2R 7839123 88 + 21139217 AAAAAGCGCAUUUGCAUACAGUUGAGGUUGGGAGCUGGUAGCUGGUAGCUGGGAUCUUGGCU-------GUGUGCUGACCAAAAAUGGCAGAAGC .....((.((((((((((((((..(((((...(((((.(....).)))))..)))))..)))-------)))))).......)))))))...... ( -30.91, z-score = -2.25, R) >droEre2.scaffold_4845 10062375 81 - 22589142 AAAAAGCGCAUUUGCAUACGGUCGAGGUUGGGA-------GCUGGUAGCUGGGAUCUUGGCU-------GUGUGCUGACCAAAAAUGGCAGAAGC .....((.(((((((((((((((((((((...(-------((.....)))..))))))))))-------)))))).......)))))))...... ( -29.21, z-score = -2.64, R) >consensus AAAAAGCGCAUUUGCAUACAGUCGAGGCUGGGA_____GAGCUGGGAUCUUGGCUCUUGGCU_______GUGUGCUGACCAAAAAUGGCAGAAGC ....(((((((........(((((((((((((................)))))).))))))).......)))))))(.(((....))))...... (-18.21 = -18.69 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:37:00 2011