| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,901,741 – 15,901,843 |
| Length | 102 |
| Max. P | 0.850279 |
| Location | 15,901,741 – 15,901,843 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 70.28 |
| Shannon entropy | 0.56117 |
| G+C content | 0.52772 |
| Mean single sequence MFE | -36.63 |
| Consensus MFE | -15.07 |
| Energy contribution | -16.94 |
| Covariance contribution | 1.86 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850279 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15901741 102 - 21146708 GCUCAAAA-CGUCGGCAGGUGUCGACUAAUGGGCAUCUGAUCAGGUGCCUCCCGUUUUGGCCCACAGUGUUGGG----------GGUUUUUUGUAUGUACUCGUGGUGCUGAU ((.(((((-(((((((....))))))....((((((((....))))))))...))))))))...(((..(((.(----------(((...........)))).)))..))).. ( -38.60, z-score = -2.18, R) >droSim1.chr2R 14550423 102 - 19596830 GCUCAAAA-CGUUGGCAGGUGUCGACUAAUGGGCAUCUGAUCAGGUGCCUCCCGUUUUGGCCCACAGUGCUGGU----------GGUUUUUUGUAUGUACUCGUGGUGCUGAU ...(((((-(((((((....))))))....((((((((....))))))))...))))))(((((((((((..(.----------.(....)..)..))))).)))).)).... ( -37.60, z-score = -2.06, R) >droSec1.super_1 13379815 102 - 14215200 GCUCAAAA-CGUUGGCAGGUGUCGACUAAUGGGCAUCUGAUCAGGUGCCUCCCGUUUUGGCCCACAGUGCUGGU----------GGUUUUUUGUAUGUACUCGUGGUGCUGAU ...(((((-(((((((....))))))....((((((((....))))))))...))))))(((((((((((..(.----------.(....)..)..))))).)))).)).... ( -37.60, z-score = -2.06, R) >droYak2.chr2R 7829436 101 + 21139217 GCUCAAAA-CGUCGGCAGGUGUCGACUAAUGGGCAUCUGAUCAGGUGCCACCCGUUUUGGCCCACAGUGCUGUG----------GGUUUUUU-UGUGUACUUUUGGUGCUGAU ...(((((-(((((((....)))))).....(((((((....)))))))....))))))(((((((....))))----------))).....-...((((.....)))).... ( -39.80, z-score = -2.75, R) >droEre2.scaffold_4845 10053933 100 - 22589142 GCUCAAAA-CGUCGGCAGGUGUCGACUAAUGGGCAUCUGAUCAGGUGCCCCCCGUCUGGGCCCACAGUGCCGUG----------GGUUUUU--CUUGUACUCGUGGUGCUGAU (((((..(-(((((((....))))))....((((((((....))))))))...)).)))))...(((..(((((----------(((....--.....))))))))..))).. ( -43.60, z-score = -2.91, R) >droAna3.scaffold_13266 10448114 111 + 19884421 GCUCGAAAUUGGCGGCAAGUGUCGGCUAAUGGGGAUCUGAUCAGGUGUCCCUCGAUUUGGCCCACUGUACCCGGAUCGGUACCAGGCUUAUUUCGGGUACUC--GAUGCUGAU ((((((.(((((((((....))).)))))).(((.((.(((((((....))).)))).)))))...(((((((((..(((.....)))...)))))))))))--)).)).... ( -39.90, z-score = -0.88, R) >droWil1.scaffold_180701 2218678 79 - 3904529 --UUGGAAAUCAUGGCAGGUGUCGACUGGCAAAACUCUUGGGUACUUCCUCUUCACUGUGUACCCGAUGUUUGG----------CACUGAU---------------------- --......((((((.((((..((....(......)....((((((..............))))))))..)))).----------)).))))---------------------- ( -19.34, z-score = -0.04, R) >consensus GCUCAAAA_CGUCGGCAGGUGUCGACUAAUGGGCAUCUGAUCAGGUGCCUCCCGUUUUGGCCCACAGUGCUGGG__________GGUUUUUU_UAUGUACUCGUGGUGCUGAU (((.((....((((((....))))))....((((((((....)))))))).....)).)))...(((((((.................................))))))).. (-15.07 = -16.94 + 1.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:59 2011