| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,386,140 – 3,386,235 |
| Length | 95 |
| Max. P | 0.889596 |
| Location | 3,386,140 – 3,386,235 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 83.14 |
| Shannon entropy | 0.31629 |
| G+C content | 0.47997 |
| Mean single sequence MFE | -30.83 |
| Consensus MFE | -16.48 |
| Energy contribution | -18.07 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.889596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3386140 95 - 23011544 CAUGAG-UAAUGGCCCUUGGCGAAGGAGCGAGAUCGCAAAGCUCGUGGUAAUUACAAAAUAAGUCC--UUUCCGUGUGGGAAGAAUGGGAGGACUUAC ((((((-(......((((....)))).(((....)))...)))))))............(((((((--((.((((.........))))))))))))). ( -30.80, z-score = -2.67, R) >droAna3.scaffold_12916 2847536 96 + 16180835 -ACCAGCUUGGAGCUUGGGGCGAAAAACCGAAAACACAAAGCUCAUGUUAAUUACAACAUAAUUCCCUCUUUCGUAUGGGAACAAUGGAGGACCCCG- -.(((((...((((((..(.((......))....)...))))))..)))........(((..(((((..........)))))..)))..))......- ( -20.70, z-score = -0.04, R) >droEre2.scaffold_4929 3416111 96 - 26641161 CAUGAG-UAAUGGCCCUUGGCGAAGAAGCCAGCUCACAGAGCUCGUGGUAAUUACAAAAUAAGUCC-UUUUCCGUGUGGGAACAAUGGGAGGACUUAC ((((((-(..((....(((((......)))))....))..)))))))............(((((((-((..((((.((....))))))))))))))). ( -34.30, z-score = -3.32, R) >droYak2.chr2L 3371345 96 - 22324452 CAUGAG-UAAUGGCCCUUGGCGAGGAAGCGAACUCACAAAGCUCGUGGUAAUUACAAAAUAAGUCC-UUUCCCGUGUGGGAGCAAUGAGAGGACUUAC ((((((-(..(((((...)))(((........))).))..)))))))............(((((((-((((...(((....)))..))))))))))). ( -32.50, z-score = -3.08, R) >droSec1.super_5 1533245 95 - 5866729 CAUGAG-UAAUGGCCCUUGGCGAAGGAGCGAGCUCGCAAAGCUCGUGGUAAUUACAAAAUAAGUUC--AUUCCGUGUGGGAACAAUGGGAGGACUUAC .....(-((((.((((((.....))).(((((((.....)))))))))).)))))....(((((((--.((((((.((....))))))))))))))). ( -31.90, z-score = -2.96, R) >droSim1.chr2L 3324929 95 - 22036055 CAUGAG-UAAUGGCCCUUGGCGAAGGAGCGAGCUCGCAAAGCUCGUGGUAAUUACAAAAUAAGUCC--AUUCCGUGUGGGAACAAUGGGAGGACUUAC .....(-((((.((((((.....))).(((((((.....)))))))))).)))))....(((((((--.((((((.((....))))))))))))))). ( -34.80, z-score = -3.59, R) >consensus CAUGAG_UAAUGGCCCUUGGCGAAGAAGCGAGCUCACAAAGCUCGUGGUAAUUACAAAAUAAGUCC__UUUCCGUGUGGGAACAAUGGGAGGACUUAC ............(((...)))......(((((((.....))))))).............(((((((...((((((.((....))))))))))))))). (-16.48 = -18.07 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:42 2011