Locus 4839

Sequence ID dm3.chr2R
Location 15,890,983 – 15,891,033
Length 50
Max. P 0.724254
window6647

overview

Window 7

Location 15,890,983 – 15,891,033
Length 50
Sequences 6
Columns 50
Reading direction reverse
Mean pairwise identity 95.60
Shannon entropy 0.08337
G+C content 0.50000
Mean single sequence MFE -16.78
Consensus MFE -14.55
Energy contribution -15.05
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.87
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.51
SVM RNA-class probability 0.724254
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 15890983 50 - 21146708
ACACUCAUCUGGAGUUAUGCUGGUCAGUAUUUUCCAGGUGCAGAGAUGCC
...(((((((((((..(((((....))))).))))))))).))....... ( -17.40, z-score =  -2.28, R)
>droAna3.scaffold_13266 10440113 50 + 19884421
ACACUCAUCGGGAGUUAUGCCGGGCAGUAUAUUCGAGGUGCAGUGAUGCC
.((((((((..((((.((((......))))))))..)))).))))..... ( -13.70, z-score =  -0.57, R)
>droEre2.scaffold_4845 10044049 50 - 22589142
ACACUCAUCUGGAGUUAUGCUGGGCAGUAUUUUCCAGGUGCAGAGAUGCC
...(((((((((((..(((((....))))).))))))))).))....... ( -17.40, z-score =  -1.92, R)
>droYak2.chr2R 7818148 50 + 21139217
ACACUCAUCUGGAGUUAUGCUGGGCAGUAUUUUCCAGGUGCAGAGAUGCC
...(((((((((((..(((((....))))).))))))))).))....... ( -17.40, z-score =  -1.92, R)
>droSec1.super_1 13368787 50 - 14215200
ACACUCAUCUGGAGUUAUGCUGGGCAGUAUUUUCCAGGUGCAGAGAUGCC
...(((((((((((..(((((....))))).))))))))).))....... ( -17.40, z-score =  -1.92, R)
>droSim1.chr2R 14539408 50 - 19596830
ACACUCAUCUGGAGUUAUGCUGGUCAGUAUUUUCCAGGUGCAGAGAUGCC
...(((((((((((..(((((....))))).))))))))).))....... ( -17.40, z-score =  -2.28, R)
>consensus
ACACUCAUCUGGAGUUAUGCUGGGCAGUAUUUUCCAGGUGCAGAGAUGCC
...(((((((((((..(((((....))))).))))))))).))....... (-14.55 = -15.05 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:36:58 2011